Sequence
atgc intronic sequence ATGC exonic sequencegtaagtcttcataattaatctttatatgttacttaattatttaatacgtgttcattgtctctcaaatttaaagattctttataagatgttctttacctttcttataagacttatacttttatgaaacatcagGAGAACTATACGGCACCTCGGATAGTACTTGCAGCATCTGGTGTTGAACATGAGGAATTGTTATCTATTGCAGAACCTCTTTTGTCTGATCTACCCAGTG
Basic information
species | Glycine max |
transcript | GLYMA05G36040.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G36040.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv11s0016g02870.t01 (Vitis vinifera), 3'ss of exon 4
gtaagtcttcataattaatctttatatgttacttaattatttaatacgtgttcattgtctctcaaatttaaagattctttataagatgttctttacctttcttataagacttatacttttatgaaacatcagGAGAACTATACGGCACCTCGGATAGTACTTGCAGCATCTGGTGTTGAACATGAGGAATTGTTATCTATTGCAGAACCTCTTTTGTCTGATCTACCCAGTG
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--------------gtaag--ttgtaaagaatgtattagaccaatttgttttgcaaaccatattactttacagtgtccatttttctggatcttttgtgttcttaagcggtggattggcttg-ggcatttcagTTAAATTATACTGCTCCTCGGATGGTACTTGCGGCTTCTGGGGTTGAACATGAGGAACTGTTATCTGTTGCAGAACCACTTCTCTCTGACCTACCCAGTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|58017252|gb|CX703994.1|CX703994EST: GGAGTTTGTTGCT GAGAACTATAGGGCACTTCGGATAGTACTTGCAGCATCTGGTGTTGAACAT
genomic: GGAGTTTGTTGCTgtaagtcttc ... gaaacatcagGAGAACTATACGGCACCTCGGATAGTACTTGCAGCATCTGGTGTTGAACAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttataagatgttctttacctttcttataagacttatacttttatgaaacatcagGAGAACTATACGGCACCTCGGATAGTACTTGCAGCATCTGGTGTTGAACATGAGGAATTGTTATCTATTGCAGAACCTCTTTTGTCTGATCTACCCAGTG
ttataagacttatact TA-rich tract