Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgattatctttatgactgagttgtaccatcattgaaggcttcaaggtgctgaatgttttccttgcggtctacttgtgttttctagGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAG

Basic information

species Glycine max
transcript GLYMA05G36020.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G36020.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv11s0016g02890.t01 (Vitis vinifera), 3'ss of exon 5
----------gtaagtgattatctttatgactga-gttgta-ccatcattgaaggcttcaaggtgctgaatgttttccttgcggtctacttgtgttttctagGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAG
           |    | ||| ||  ||| |  | ||| ||    | ||     |  | || ||  | || |||    ||   || | ||    ||||  ||||||| || || |||||||| |||||| ||||||||||||||||||| ||| |||||||  | |||||| |||| || ||||||||||||
aaaggttttcctgttgggttagctgaatgtcaaatgttttagttcttatctcttgtataaacgttataaa-gttgaggtt-ttgttttctcaaattttgcagGTTGAGTATAAGCACATGACACCTGCTGCTGCCCTGGAATATGTTCGTTCTAGAAGACCACGTGTGCTATTAGCTCCCTCACAGTGGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208249611|gb|GE048622.1|GE048622
EST:     CGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTG                         GTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTACGGTCT
genomic: CGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTGgtaagtgatt ... tgttttctagGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
EST: gi|208183266|gb|GD984036.1|GD984036
EST:     GGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTG                         GTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
genomic: GGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTGgtaagtgatt ... tgttttctagGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
EST: gi|193346442|gb|FK311726.1|FK311726
EST:     GGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTG                         GTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAGTATGTTCGGTCT
genomic: GGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTGgtaagtgatt ... tgttttctagGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
EST: gi|193621668|gb|FK568554.1|FK568554
EST:     GGAGGAGTACAACAATTGTGCTTTGTTATCTG                         GTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
genomic: GGAGGAGTACAACAATTGTGCTTTGTTATCTGgtaagtgatt ... tgttttctagGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
EST: gi|193393841|gb|FK359918.1|FK359918
EST:     GGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTG                         GTTGAATACAAACACTTGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
genomic: GGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTGgtaagtgatt ... tgttttctagGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
EST: gi|208069085|gb|GD863827.1|GD863827
EST:     CGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTG                         GTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
genomic: CGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTGgtaagtgatt ... tgttttctagGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
EST: gi|208302418|gb|GE097033.1|GE097033
EST:     GGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTG                         GTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
genomic: GGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTGgtaagtgatt ... tgttttctagGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
EST: gi|21638936|gb|BM139982.1|BM139982
EST:     ACAACAATTGTGCTTTGTTATCTG                         GTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
genomic: ACAACAATTGTGCTTTGTTATCTGgtaagtgatt ... tgttttctagGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
EST: gi|120533128|gb|EH261261.1|EH261261
EST:     ACTGTAAAGCTGGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTG                         GTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
genomic: ACTGTAAAGCTGGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTGgtaagtgatt ... tgttttctagGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
EST: gi|208133373|gb|GD930396.1|GD930396
EST:     GGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTG                         GTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
genomic: GGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTGgtaagtgatt ... tgttttctagGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
EST: gi|192302769|gb|FG993789.1|FG993789
EST:     ACTGTAAAGCTGGTCGGGGGAGGAGTACGACAATTGTGCTTTGTTATCTG                         GTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
genomic: ACTGTAAAGCTGGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTGgtaagtgatt ... tgttttctagGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
EST: gi|208187070|gb|GD985114.1|GD985114
EST:     CGGGGGAGGAGTACAACAATTGTCCGCTTTGTTATCTG                         GTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
genomic: CGGGGGAGGAGTACAACAATTGT--GCTTTGTTATCTGgtaagtgatt ... tgttttctagGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
EST: gi|192302768|gb|FG993788.1|FG993788
EST:     ACTGTAAAGCTGGTCGGGGGAGGAGTACGACAATTGTGCTTTGTTATCTG                         GTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
genomic: ACTGTAAAGCTGGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTGgtaagtgatt ... tgttttctagGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
EST: gi|208264236|gb|GE064356.1|GE064356
EST:     GGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTG                         GTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
genomic: GGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTGgtaagtgatt ... tgttttctagGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
EST: gi|208071910|gb|GD871438.1|GD871438
EST:     CGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTG                         GTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
genomic: CGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTGgtaagtgatt ... tgttttctagGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
EST: gi|207781717|gb|GD754422.1|GD754422
EST:     CGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTG                         GTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
genomic: CGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTGgtaagtgatt ... tgttttctagGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
EST: gi|193324811|gb|FK290151.1|FK290151
EST:     CGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTG                         GTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
genomic: CGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTGgtaagtgatt ... tgttttctagGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
EST: gi|254318674|gb|GR828618.1|GR828618
EST:     ACTGTAAAGCTGGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTG                         GTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
genomic: ACTGTAAAGCTGGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTGgtaagtgatt ... tgttttctagGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
EST: gi|193328494|gb|FK294710.1|FK294710
EST:     CGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTG                         GTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
genomic: CGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTGgtaagtgatt ... tgttttctagGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
EST: gi|193445325|gb|FK408048.1|FK408048
EST:     GGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTG                         GTTGAATACAAACACATGACGCCTGCT
genomic: GGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTGgtaagtgatt ... tgttttctagGTTGAATACAAACACATGACGCCTGCT
EST: gi|120533275|gb|EH261408.1|EH261408
EST:     ACTGTAAAGCTGGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTG                         GTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
genomic: ACTGTAAAGCTGGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTGgtaagtgatt ... tgttttctagGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
EST: gi|193538984|gb|FK497296.1|FK497296
EST:     CGGGGGAGGAGTACAACTTTAATTGTGCTTTGTTATCTG                         GTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
genomic: CGGGGGAGGAGTACAAC---AATTGTGCTTTGTTATCTGgtaagtgatt ... tgttttctagGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
EST: gi|208220451|gb|GE017671.1|GE017671
EST:     GGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTG                         GTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
genomic: GGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTGgtaagtgatt ... tgttttctagGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
EST: gi|208044651|gb|GD841075.1|GD841075
EST:     GGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTG                         GTTGAATACAAACACATGACGCCTGCTACTGCTCTGGAATATGTTCGGTCT
genomic: GGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTGgtaagtgatt ... tgttttctagGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
EST: gi|208120625|gb|GD918012.1|GD918012
EST:     GGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTG                         GTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT
genomic: GGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTGgtaagtgatt ... tgttttctagGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgaaggcttcaaggtgctgaatgttttccttgcggtctacttgtgttttctagGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAG
                                             tgttttct  CT-rich tract
                     aatgtttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtgattatctttatgactgagttgtaccatcattgaaggcttcaaggtgctgaatgttttccttgcggtctacttgtgttttctagGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG