1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttcattttcccattcctagttgctttcttcgtagtttcatttttaacttggtgtcttaatttcagtttctttctttgcaatcttatttcctcaattatagGTTTTATCTGCTATACCCATATTTTGGTCCCCATTTTTGGCAGTACCACTTGTTTTTATGCTCCTTTATGTTTGGAGTAGAGAATTTCCGAATGCCCAAA
species | Glycine max |
transcript | GLYMA05G35990.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCGCAACTTACCATCTTGGATTAGATCATCCAGCTTACATTGCACTATTGTACGATAAAGTGTTCTACGGTTTTCAGEST: gi|298164512|gb|HO014157.1|HO014157
genomic: CCGCAACTTACCATCTTGGATTAGATCATCCAGCTTACATTGCACTATTGTACGATAAAGTGTTCTACGGTTTTCAG
EST: CCGCAACTTACCATCTTGGATTATATCATCCAGCTTACATTGCACTATTGTACGATAAAGTGTTCTACGGTTTTCAG
genomic: CCGCAACTTACCATCTTGGATTAGATCATCCAGCTTACATTGCACTATTGTACGATAAAGTGTTCTACGGTTTTCAG
acttggtgtcttaatttcagtttctttctttgcaatcttatttcctcaattatagGTTTTATCTGCTATACCCATATTTTGGTCCCCATTTTTGGCAGTACCACTTGTTTTTATGCTCCTTTATGTTTGGAGTAGAGAATTTCCGAATGCCCAAA
tttctttctttgcaat CT-rich tract
aatcttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcattttcccattcctagttgctttcttcgtagtttcatttttaacttggtgtcttaatttcagtttctttctttgcaatcttatttcctcaattatagGTTTTATCTGCTATACCCATATTTTGGTCCCCATTTTTGGCAGTACCACTTGTTTTTATGCTCCTTTATGTTTGGAGTAGAGAATTTCCGAATGCCCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - -ccattcc
- - - - - - - - - - tgctttc
- - - - - - - - - - - - - - - - - - - - - - - - tggtgtc