1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aacaatatgctctctgtttagcattacatagaagagaagagatgactgggaatatgactgtagtgtgtggtaattttttatttattttttacttttgcagACTGACACGGCTTCTGTCTTATTAGAAGCTATTGGCTATATCAGATTCCTTCAGAGTCAAATTGAG
species | Glycine max |
transcript | GLYMA05G35610.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TAGGTGACAGAATTACCGCCCTTCATCAACTCGTTTCCCCATTCGGAAAG ACTGACACGGCTTCTGTCTTATTAGAAGCTATTGGCTATATCAGATTCCTTEST: gi|13311263|gb|BG404896.1|BG404896
genomic: TAGGTGACAGAATTACCGCCCTTCATCAACTCGTTTCCCCATTCGGAAAGgtttaaacct ... acttttgcagACTGACACGGCTTCTGTCTTATTAGAAGCTATTGGCTATATCAGATTCCTT
EST: TAGGTGACAGAATTACCGCCCTTCATCAACTCGTTTCCCCATTCGGAAAG ACTGACACGGCTTCTGTCTTATTAGAAGCTATTGGCTATATCAGATTCCTTEST: gi|254327515|gb|GR837124.1|GR837124
genomic: TAGGTGACAGAATTACCGCCCTTCATCAACTCGTTTCCCCATTCGGAAAGgtttaaacct ... acttttgcagACTGACACGGCTTCTGTCTTATTAGAAGCTATTGGCTATATCAGATTCCTT
EST: TAGGTGACAGAATTACCGCCCTTCATCAACTCGTTTCCCCATTCGGAAAG ACTGACACGGCTTCTGTCTTATTAGAAGCTATTGGCTATATCAGATTCCTT
genomic: TAGGTGACAGAATTACCGCCCTTCATCAACTCGTTTCCCCATTCGGAAAGgtttaaacct ... acttttgcagACTGACACGGCTTCTGTCTTATTAGAAGCTATTGGCTATATCAGATTCCTT
ctgggaatatgactgtagtgtgtggtaattttttatttattttttacttttgcagACTGACACGGCTTCTGTCTTATTAGAAGCTATTGGCTATATCAGATTCCTTCAGAGTCAAATTGAG
ttttttatttattttt CT-rich tract
tgtggtaattttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacaatatgctctctgtttagcattacatagaagagaagagatgactgggaatatgactgtagtgtgtggtaattttttatttattttttacttttgcagACTGACACGGCTTCTGTCTTATTAGAAGCTATTGGCTATATCAGATTCCTTCAGAGTCAAATTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - -tatgctc
- - - - - - - - - - gcattac
- - - - - - - - - - - - - - - gaagagaa
- - - - - - - - - - - - - - - - - - - - -atgactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgtgtg