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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctcgcatggcaatagttgcctcgtttagtcatgaattgctgtgctagatcctgattgaccttttttttttcaaacacatttacagAGAACTGTTCTTGCGATGCCAGAAAATGGAATTGGTTTGTTCCCTGATGTAGGTTTTGCTCATATAGCGGCTCAAAGTCCAGGGGAAGGATCCGTTG

Basic information

species Glycine max
transcript GLYMA05G35260.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G35260.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv11s0016g04290.t01 (Vitis vinifera), 3'ss of exon 6
-----gtatgctcgcatggcaatag--ttgcctcgtttagtca--tgaattgctgtgctagatcctgattgaccttttttttttcaaacacatttacagAGAACTGTTCTTGCGATGCCAGAAAATGGAATTGGTTTGTTCCCTGATGTAGGTTTTGCTCATATAGCGGCTCAAAGTCCAGGGGAAGGATCCGTTG
      |   |    ||||  |||   |||  | |     |||  |  | |  ||| |||  | |||||     ||| ||| | | ||    ||| ||||||||| ||||||| |||||||||||||||||||| ||||| || ||||| || |||||| | ||||| || || |||||||| |||||||| ||||
gtataatggccatatatggacataaatttgttttgcaacttcaattagaataatgttctaatttctgata----tttatttgtactaatttgttt-cagAGAACTCTTCTTGCCATGCCAGAAAATGGAATTGGCTTGTTTCCAGATGTTGGATTTGCTTACATAGCAGCACAGAGTCCAGGAGAAGGATCAGTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207773587|gb|GD745705.1|GD745705
EST:     TTTATCTGGTCATGGCCGCTATCGCATCATAACAGAG                         AGAACTGTTCTTGCGATGCCAGAAAATGGAATTGGTTTGTTCCCTGATGTA
genomic: TTTATCTGGTCATGGCCGCTATCGCATCATAACAGAGgtatgctcgc ... acatttacagAGAACTGTTCTTGCGATGCCAGAAAATGGAATTGGTTTGTTCCCTGATGTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgaattgctgtgctagatcctgattgaccttttttttttcaaacacatttacagAGAACTGTTCTTGCGATGCCAGAAAATGGAATTGGTTTGTTCCCTGATGTAGGTTTTGCTCATATAGCGGCTCAAAGTCCAGGGGAAGGATCCGTTG
                      gattgac  putative branch site (score: 3)
                              ttttttttttcaaaca  TA-rich tract