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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttccatgtctgtaccagttcttgtttttagaatataattttctatttgcccctgtctgatgtcaaaattaaattcttgttgttcttcagTTATCATGCCTCCATCAGCCCTTGACCGTCTAG

Basic information

species Glycine max
transcript GLYMA05G34630.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G34630.2 (Glycine max), 3'ss of exon 4
lower sequence: AT4G38930.2 (Arabidopsis thaliana), 3'ss of exon 4
gtaagtttccatgtctgtaccagttcttgtttttagaatataattttctatttgcccctgtctgatgtcaaaattaaattcttgttgt-----tcttcagTTATCATGCCTCCATCAGCCCTTGACCGTCTAG
|||||| |  |    |  |     | |   |||   | | ||  || || |||       ||   | |   ||||  |||  | |  |     | ||||||||| ||||| |||||||||||||| |||||||
gtaagtctttaatcttacaaataatgtgtctttccaagtttatgttactctttataatgctcaagttttgtaatttgatttctttgatatctattttcagTTATAATGCCACCATCAGCCCTTGATCGTCTAG

upper sequence: GLYMA05G34630.2 (Glycine max), 3'ss of exon 4
lower sequence: AT2G21270.3 (Arabidopsis thaliana), 3'ss of exon 4
gtaagt-ttccatgtctgtaccagttcttgtttttagaatataattttctatttgcccctgtctgatgtcaaaattaaattcttgttgttcttcagTTATCATGCCTCCATCAGCCCTTGACCGTCTAG
|||||| ||| || |    |||| |  ||||||  |         | | |||| |  |  | |||| ||   ||||   |  |  || |  ||||||||| ||||| |||||||||||||| |||||||
gtaagtcttctatctagacaccaatgtttgtttcca---------tctgtatt-gttcaagcctgaggttttaatttg-tgttaattctatttcagTTATAATGCCACCATCAGCCCTTGATCGTCTAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192322766|gb|FK014457.1|FK014457
EST:     CCCCAAATCGAAAGTGGTGACAAAA                         TTATCATGCCTCCATCAGCCCTTGACCGTCTAG
genomic: CCCCAAATCGAAAGTGGTGACAAAAgtaagtttcc ... tgttcttcagTTATCATGCCTCCATCAGCCCTTGACCGTCTAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taattttctatttgcccctgtctgatgtcaaaattaaattcttgttgttcttcagTTATCATGCCTCCATCAGCCCTTGACCGTCTAG
                   gtctgat  putative branch site (score: 4)
                                      ttcttgttgttcttc  putative PPT
                             aaaattaaattcttgt  TA-rich tract