1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaaatcactcgatcattattataccatcacaacaaattaacataaaaaaaaacaatttaatacgatttgacaaccttgtcttctttttttcggtttggaacatagGATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTGGGGCATCATCCTGTAAGAAGCATAGGACATCACGGTGACACCAAAGAGC
species | Glycine max |
transcript | GLYMA05G33640.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCGAGAAG GATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTGEST: gi|208132534|gb|GD929935.1|GD929935
genomic: AGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAGgtaaatcact ... tggaacatagGATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTG
EST: ACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAG GATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTGEST: gi|208143951|gb|GD941568.1|GD941568
genomic: ACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAGgtaaatcact ... tggaacatagGATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTG
EST: AGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAG GATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTGEST: gi|151396212|gb|EV266089.1|EV266089
genomic: AGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAGgtaaatcact ... tggaacatagGATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTG
EST: ACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAG GATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTGEST: gi|18848901|gb|BM568011.1|BM568011
genomic: ACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAGgtaaatcact ... tggaacatagGATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTG
EST: ACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAG GATCTGGAAATAGCATTGAAGGATTCTACTGCCEST: gi|151406975|gb|EV276790.1|EV276790
genomic: ACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAGgtaaatcact ... tggaacatagGATCTGGAAATAGCATTGAAGGATTCTACTGCC
EST: ACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAG GATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTGEST: gi|193326435|gb|FK291518.1|FK291518
genomic: ACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAGgtaaatcact ... tggaacatagGATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTG
EST: AAAAATATTTATCAAAGCTCTTGAAG GATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTGEST: gi|120534060|gb|EH262193.1|EH262193
genomic: AAAAATATTTATCAAAGCTCTTGAAGgtaaatcact ... tggaacatagGATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTG
EST: ACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAG GATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTGEST: gi|254314579|gb|GR829572.1|GR829572
genomic: ACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAGgtaaatcact ... tggaacatagGATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTG
EST: ACTGGAGAGGAGTGCTTCCAAGGGAAAAATA-TTATCAAAGCTCTTGAAG GATCTGGAAATAGCATTGAAGGATTCTACTTGCCAAGTGGAAGATTGTTGTEST: gi|11274883|gb|BF325208.1|BF325208
genomic: ACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAGgtaaatcact ... tggaacatagGATCTGGAAATAGCATTGAAGGATTCTAC-TGCCAAGTGGAAGATTGTTGT
EST: ACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAG GATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTGEST: gi|254314578|gb|GR829571.1|GR829571
genomic: ACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAGgtaaatcact ... tggaacatagGATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTG
EST: ACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAG GATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTGEST: gi|207762677|gb|GD732908.1|GD732908
genomic: ACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAGgtaaatcact ... tggaacatagGATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTG
EST: AAAGCTCTTGAAG GATCTGGAAATAGCATTGAAGGAATTCTACTGCCAAGTGGAAGATTGTTGTEST: gi|193588085|gb|FK543106.1|FK543106
genomic: AAAGCTCTTGAAGgtaaatcact ... tggaacatagGATCTGGAAATAGCATTGAAGG-ATTCTACTGCCAAGTGGAAGATTGTTGT
EST: ACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAG GATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTGEST: gi|9987619|gb|BE661727.1|BE661727
genomic: ACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAGgtaaatcact ... tggaacatagGATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTG
EST: ACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAG GATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTGEST: gi|192299309|gb|FG990734.1|FG990734
genomic: ACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAGgtaaatcact ... tggaacatagGATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTG
EST: ACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAG GATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTTGTTGTEST: gi|207821442|gb|GD790157.1|GD790157
genomic: ACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAGgtaaatcact ... tggaacatagGATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATT-GTTGT
EST: AAAGCTCTTGAAG GATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTGEST: gi|192328997|gb|FK019696.1|FK019696
genomic: AAAGCTCTTGAAGgtaaatcact ... tggaacatagGATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTG
EST: ACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAG GATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTTGTTGTEST: gi|192301322|gb|FG990212.1|FG990212
genomic: ACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAGgtaaatcact ... tggaacatagGATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATT-GTTGT
EST: ACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAG GATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTGEST: gi|308098252|gb|HO759993.1|HO759993
genomic: ACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAGgtaaatcact ... tggaacatagGATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTG
EST: ACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAG GATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTG
genomic: ACTGGAGAGGAGTGCTTCCAAGGGAAAAATATTTATCAAAGCTCTTGAAGgtaaatcact ... tggaacatagGATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTG
aacaatttaatacgatttgacaaccttgtcttctttttttcggtttggaacatagGATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTGGGGCATCATCCTGTAAGAAGCATAGGACATCACGGTGACACCAAAGAGC
atttgac putative branch site (score: 4)
ccttgtcttctttttt putative PPT
ttcttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatcactcgatcattattataccatcacaacaaattaacataaaaaaaaacaatttaatacgatttgacaaccttgtcttctttttttcggtttggaacatagGATCTGGAAATAGCATTGAAGGATTCTACTGCCAAGTGGAAGATTGTTGTGGGGCATCATCCTGTAAGAAGCATAGGACATCACGGTGACACCAAAGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC