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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgtcgtgtgccatttacttcatgatgtttaattttaatcttttctattctcagtgcaaactcttctgaattgatgtgtgcagTCAATTACCATTCAGTGTTTGGAAGCTCTTCAGTTTTTGCATAGCCTTGGACTAATACACTGCGACTTGAAACCAGAGAATATTTTGGTTAAAAGCTATA

Basic information

species Glycine max
transcript GLYMA05G33560.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G33560.1 (Glycine max), 3'ss of exon 4
lower sequence: AT1G73460.1 (Arabidopsis thaliana), 3'ss of exon 4
gttcgtcgtgtgccatttacttcatgatgtttaattttaatcttttctattctcagtgcaaa-ctcttctgaattgatgtgtgcagTCAATTACCATTCAGTGTTTGGAAGCTCTTCAGTTTTTGCATAGCCTTGGACTAATACACTGCGACTTGAAACCAGAGAATATTTTGGTTAAAAGCTATA
||| |||  |   |||   | | |  ||  |||||    || | |   | ||  ||| | || |||||  | || | | ||| |||||||| || || |||||| | ||| | ||||| ||| | ||| |||||||||| |||||||| || ||||| || ||||| || ||||||||||| ||||
gtttgtc-cgcttcat---cattaacattcttaat--agatatgtataaatccgagttctaatctctttgggatcgttctgtacagTCAATCACTATCCAGTGTCTCGAATCACTTCAATTTCTACATGGCCTTGGACTTATACACTGTGATTTGAAGCCTGAGAACATATTGGTTAAAAGTTATA

upper sequence: GLYMA05G33560.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv01s0011g01590.t01 (Vitis vinifera), 3'ss of exon 10
gttcgtcgtgtgccatttacttcatgatgtttaattttaatcttttctattctcagtgcaaact-cttctgaattgatgtgtgcagTCAATTACCATTCAGTGTTTGGAAGCTCTTCAGTTTTTGCATAGCCTTGGACTAATACACTGCGACTTGAAACCAGAGAATATTTTGGTTAAAAGCTATA
  |  | | ||  |||||      |||| | |   | |  |  |  |         || || || ||| | ||||| | ||||||||| ||||| |||||||||||||| || |||||||| |||||| |||| || || ||||| || ||  |||| || |||||||||||||| || |||||||
-gttatggagttacatttttaaactgatatctttctctcctactgacatgctggtatgtaacctgcttttaaattgttctgtgcagTCCATTACAATTCAGTGTTTGGAGGCACTTCAGTTCTTGCATGGCCTAGGCCTTATACATTGTGATCTGAAGCCTGAGAATATTTTGGTGAAGAGCTATA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192295803|gb|FG992614.1|FG992614
EST:     TTAATAGAGAATCACGTGGTGAAGTGTACTTTACAATGCCAAGATTGCAG                         TCA-TTACCATTCAGTGTTTGGAAGCTCTT
genomic: TTAATAGAGAATCAGGTGGTGAAGTGTACTTTACAATGCCAAGATTGCAGgttcgtcgtg ... atgtgtgcagTCAATTACCATTCAGTGTTTGGAAGCTCTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaattttaatcttttctattctcagtgcaaactcttctgaattgatgtgtgcagTCAATTACCATTCAGTGTTTGGAAGCTCTTCAGTTTTTGCATAGCCTTGGACTAATACACTGCGACTTGAAACCAGAGAATATTTTGGTTAAAAGCTATA
     tttaatcttttctatt  TA-rich tract