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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattctgtcaatgtttcgttgattatccattatgaaaaaaatgcctaatggtattttcttgattattgctttctgctttttgcatccagCATTCCTCTCGTACACTGCCTCAGCAATTGCCGTGACATTGTTCTTGGTTTTGTATTGTGCTCCCCGTCATGGCCAGACTAATATTTTGGTTTATACTGG

Basic information

species Glycine max
transcript GLYMA05G33020.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213602237|gb|DB958497.1|DB958497
EST:     GAAATCTCTTAGTTCTGTACAAGAAATATGGGAATTGGCCATTCAACCTG                         CATTCCTCTCGTACACTGCCTCAGCAATTGCCGT
genomic: GAAATCTCTTAGTTCTGTACAAGAAATATGGGAATTGGCCATTCAACCTGgtattctgtc ... ttgcatccagCATTCCTCTCGTACACTGCCTCAGCAATTGCCGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaaaaatgcctaatggtattttcttgattattgctttctgctttttgcatccagCATTCCTCTCGTACACTGCCTCAGCAATTGCCGTGACATTGTTCTTGGTTTTGTATTGTGCTCCCCGTCATGGCCAGACTAATATTTTGGTTTATACTGG
                               ttgctttctgcttttt  CT-rich tract
                 tattttcttgattatt  TA-rich tract