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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctttattaaacctaaacaacaattgtggttttcttctttattccaaaataattcaacagaattacattatggcatgcagAAGTGGACGAATGGGAAATAGCTCCTCGTTTCTCAGATTTGCTGGCAAACACTAGTGTGCAGTTTTTCAAAGACAGAGTAAAAGTTTTGAATCCCTCTGA

Basic information

species Glycine max
transcript GLYMA05G32900.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G32900.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv07s0031g02690.t01 (Vitis vinifera), 3'ss of exon 4
-------------------------------------------gtatgctttatta-aacctaaacaacaattgtgg----ttttcttctttattccaaaataattcaacag--------aattacattatggcatgcagAAGTGGACGAATGGGAAATAGCTCCTCGTTTCTCAGATTTGCTGGCAAACACTAGTGTGCAGTTTTTCAAAGACAGAGTAAAAGTTTTGAATCCCTCTGA
                                           || |    || || ||  ||    || ||| ||     | |       |||   ||||| |||   | |        ||    ||| |    ||||||||| || | ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||| || ||||| ||| ||||||||||
gtatgttgtttaatttgttgaacaggtccattaattcattcctgtttatgataatataatttatgtcactattatgaaaaatatgaaaaaatataataaaatgattttcctgttcctactaacatgattttcctttgcagAAGTAGATGCATGGGAAATAGCTCCGCGTTTCTCAGATTTGCTGGCAAACACTGGTGTGCAGTTTTTCCAAGACAGGGTCAAAGTATTGCATCCCTCTGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtggttttcttctttattccaaaataattcaacagaattacattatggcatgcagAAGTGGACGAATGGGAAATAGCTCCTCGTTTCTCAGATTTGCTGGCAAACACTAGTGTGCAGTTTTTCAAAGACAGAGTAAAAGTTTTGAATCCCTCTGA
            tttattccaaaataat  TA-rich tract