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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatacacctatttccttcatgaaatgagttaaggaagcaagtgttcacattttattttgaaaaaaagttgagagttgtcagttcacacattacaatatatgattctttgtttaaatgaatctgttgcagTTGTGTGTCCTTGGCAACCTTTGCCCAGAAACTGTGGAGGAAGCTATTGCTATGGTTCCATCTATCAAG

Basic information

species Glycine max
transcript GLYMA05G32260.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7591146|gb|AW706885.1|AW706885
EST:     AATTCTCGCCAGATATGAATTGGCTGAGTTTGAG                         TTGTGTGTCCTTGGCAACCTTTGCCCAGAAACTGTGGAGGAAGCTATTGCT
genomic: AATTCTCGCCAGATATGAATTGGCTGAGTTTGAGgtaatacacc ... tctgttgcagTTGTGTGTCCTTGGCAACCTTTGCCCAGAAACTGTGGAGGAAGCTATTGCT
EST: gi|15664606|gb|BI701977.1|BI701977
EST:     AATTCTCGCCAGATATGAATTGGCTGAGTTTGAG                         TTGTGTGTCCTTGGCAACCTTTGCCCAGAAACTGTGGAGGAAGCTATTGCT
genomic: AATTCTCGCCAGATATGAATTGGCTGAGTTTGAGgtaatacacc ... tctgttgcagTTGTGTGTCCTTGGCAACCTTTGCCCAGAAACTGTGGAGGAAGCTATTGCT
EST: gi|209729464|gb|BW651831.1|BW651831
EST:     AATTCTCGCCAGATATGAATTGGCTGAGTTTGAG                         TTGTGTGTCCTTGGCAACCTTTGCCCAGAAACTGTGGAGGAAGCTATTGCT
genomic: AATTCTCGCCAGATATGAATTGGCTGAGTTTGAGgtaatacacc ... tctgttgcagTTGTGTGTCCTTGGCAACCTTTGCCCAGAAACTGTGGAGGAAGCTATTGCT
EST: gi|192323976|gb|FK015697.1|FK015697
EST:     AATTCTCGCCAGATATGAATTGGCTGAGTTTGAG                         TTGTGTGTCCTTGGCAACCTTTGCCCAGAAACTGTGGAGGAAGCTATTGCT
genomic: AATTCTCGCCAGATATGAATTGGCTGAGTTTGAGgtaatacacc ... tctgttgcagTTGTGTGTCCTTGGCAACCTTTGCCCAGAAACTGTGGAGGAAGCTATTGCT
EST: gi|213604131|gb|DB974229.1|DB974229
EST:     AATTCTCGCCAGATATGAATTGGCTGAGTTTGAG                         TTGTGTGTCCTTGGCAACCTTTGCCCAGAAACTGTGGAGGAAGCTATTGCT
genomic: AATTCTCGCCAGATATGAATTGGCTGAGTTTGAGgtaatacacc ... tctgttgcagTTGTGTGTCCTTGGCAACCTTTGCCCAGAAACTGTGGAGGAAGCTATTGCT
EST: gi|9899186|gb|BE608084.1|BE608084
EST:     AATTCTCGCCAGATATGAATTGGCTGAGTTTGAG                         TTGTGTGTCCTTGGCAACCTTTGCCCAGAAACTGTGGAGGAAGCTATTGCT
genomic: AATTCTCGCCAGATATGAATTGGCTGAGTTTGAGgtaatacacc ... tctgttgcagTTGTGTGTCCTTGGCAACCTTTGCCCAGAAACTGTGGAGGAAGCTATTGCT
EST: gi|213591496|gb|DB955760.1|DB955760
EST:     AATTCTCGCCAGATATGAATTGGCTGAGTTTGAG                         TTGTGTGTCCTTGGCAACCTTTGCCCAGAAACTGTGGAGGAAGCTATTGCT
genomic: AATTCTCGCCAGATATGAATTGGCTGAGTTTGAGgtaatacacc ... tctgttgcagTTGTGTGTCCTTGGCAACCTTTGCCCAGAAACTGTGGAGGAAGCTATTGCT
EST: gi|193692602|gb|FK632803.1|FK632803
EST:     AATTCTCGCCAGATATGAATTGGCTGAGTTTGAG                         TTGTGTGTCCTTGGCAACCTTTGCCCAGAAACTGTGGAGGAAGCTATTGCT
genomic: AATTCTCGCCAGATATGAATTGGCTGAGTTTGAGgtaatacacc ... tctgttgcagTTGTGTGTCCTTGGCAACCTTTGCCCAGAAACTGTGGAGGAAGCTATTGCT
EST: gi|120533986|gb|EH262119.1|EH262119
EST:     AATTCTCGCCAGATATGAATTGGCTGAGTTTGAG                         TTGTGTGTCCTTGGCAACCTTTGCCCAGAAACTGTGGAGGAAGCTATTGCT
genomic: AATTCTCGCCAGATATGAATTGGCTGAGTTTGAGgtaatacacc ... tctgttgcagTTGTGTGTCCTTGGCAACCTTTGCCCAGAAACTGTGGAGGAAGCTATTGCT
EST: gi|193487106|gb|FK449301.1|FK449301
EST:     TTGGCTGAGTTTGAG                         TTGTGTGTCCTTGGCAACCTTTGCCCAGAAACTGTGGAGGAAGCTATTGCT
genomic: TTGGCTGAGTTTGAGgtaatacacc ... tctgttgcagTTGTGTGTCCTTGGCAACCTTTGCCCAGAAACTGTGGAGGAAGCTATTGCT
EST: gi|18718067|gb|BM523023.1|BM523023
EST:     AATTCTCGCCAGATATGAATTGGCTGAGTTTGAG                         TTGTGTGTCCTTGGCAACCTTTGCCCAGAAACTGTGGAGGAAGCTATTGCT
genomic: AATTCTCGCCAGATATGAATTGGCTGAGTTTGAGgtaatacacc ... tctgttgcagTTGTGTGTCCTTGGCAACCTTTGCCCAGAAACTGTGGAGGAAGCTATTGCT
EST: gi|5509484|gb|AI856042.1|AI856042
EST:     AATTCTCGCCAGATATGAATTGGCTGAGTTTGAG                         TTGTGTGTCCTTGGCAACCTTTGCCCAGAAACTGTGGAGGAAGCTATTGCT
genomic: AATTCTCGCCAGATATGAATTGGCTGAGTTTGAGgtaatacacc ... tctgttgcagTTGTGTGTCCTTGGCAACCTTTGCCCAGAAACTGTGGAGGAAGCTATTGCT
EST: gi|208043373|gb|GD840091.1|GD840091
EST:     TTCGAGAAATTCTCGCCAGATATGAATTGGCTGAGTTTGAG                         TTGTGTGTCCTTGGCAACCTTTGCCCAGAAACTGTGGAGGAAGCTATTGCT
genomic: TTCGAGAAATTCTCGCCAGATATGAATTGGCTGAGTTTGAGgtaatacacc ... tctgttgcagTTGTGTGTCCTTGGCAACCTTTGCCCAGAAACTGTGGAGGAAGCTATTGCT
EST: gi|120534144|gb|EH262277.1|EH262277
EST:     AATTCTCGCCAGATATGAATTGGCTGAGTTTGAG                         TTGTGTGTCCTTGGCAACCTTTGCCCAGAAACTGTGGAGGAAGCTATTGCT
genomic: AATTCTCGCCAGATATGAATTGGCTGAGTTTGAGgtaatacacc ... tctgttgcagTTGTGTGTCCTTGGCAACCTTTGCCCAGAAACTGTGGAGGAAGCTATTGCT
EST: gi|9898920|gb|BE607888.1|BE607888
EST:     AATTCTCGCCAGATATGAATTGGCTGAGTTTGAG                         TTGTGTGTCCTTGGCAACCTTTGCCCAGAAACTGTGGAGGAAGCTATTGCT
genomic: AATTCTCGCCAGATATGAATTGGCTGAGTTTGAGgtaatacacc ... tctgttgcagTTGTGTGTCCTTGGCAACCTTTGCCCAGAAACTGTGGAGGAAGCTATTGCT
EST: gi|5509324|gb|AI855882.1|AI855882
EST:     AATTCTCGCCAGATATGAATTGGCTGAGTTTGAG                         TTGTGTGTCCTTGGCAACCTTTGCCCAGAAACTGTGGAGGAAGCTATTGCT
genomic: AATTCTCGCCAGATATGAATTGGCTGAGTTTGAGgtaatacacc ... tctgttgcagTTGTGTGTCCTTGGCAACCTTTGCCCAGAAACTGTGGAGGAAGCTATTGCT
EST: gi|192320820|gb|FK013910.1|FK013910
EST:     AATTCTCGCCAGATATGAATTGGCTGAGTTTGAG                         TTGTGTGTCCTTGGCAACCTTTGCCCAGAAACTGTGGAGGAAGCTATTGCT
genomic: AATTCTCGCCAGATATGAATTGGCTGAGTTTGAGgtaatacacc ... tctgttgcagTTGTGTGTCCTTGGCAACCTTTGCCCAGAAACTGTGGAGGAAGCTATTGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtcagttcacacattacaatatatgattctttgtttaaatgaatctgttgcagTTGTGTGTCCTTGGCAACCTTTGCCCAGAAACTGTGGAGGAAGCTATTGCTATGGTTCCATCTATCAAG
              attacaatatatgatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaatacacctatttccttcatgaaatgagttaaggaagcaagtgttcacattttattttgaaaaaaagttgagagttgtcagttcacacattacaatatatgattctttgtttaaatgaatctgttgcagTTGTGTGTCCTTGGCAACCTTTGCCCAGAAACTGTGGAGGAAGCTATTGCTATGGTTCCATCTATCAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA