Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactagattttttacaaattttttgaaagtatcaaattttaacactgccagtgacaaaggtaggtatttatagtgtttccttctcttgaaatgaaaacttcagATTGCTAAGCTGAGTATGATTCCAGTATCTTGTTTCCTGGAAGTTATCTTGGATAATGTGCGATATTCAAGGGACACAAAACTTAGCATTTCTCTAGTTC

Basic information

species Glycine max
transcript GLYMA05G31940.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G31940.1 (Glycine max), 3'ss of exon 4
lower sequence: AT4G39390.2 (Arabidopsis thaliana), 3'ss of exon 3
gtaactagattttttacaaattttttgaaagtatcaaattttaacactgccagtgacaaaggtaggtatttatagtgtttccttctcttgaaatgaaaacttcagATTGCTAAGCTGAGTATGATTCCAGTATCTTGTTTCCTGGAAGTTATCTTGGATAATGTGCGATATTCAAGGGACACAAAACTTAGCATTTCTCTAGTTC
          | | | |   |||||       ||     ||||    | ||   |   || ||   | ||  ||   | |             |    | | |||||||| |||||||||||||| || || |||||| | || ||||||||  | || |||||  | |||||||| || ||||| ||||||||||   ||||||
---------gtctgtcc---tttttcatctcgatgcggatttacgttttccttcgtttaaagttttttttagtaagatcttgaaacgagtgtgttggcattgcagATTGCGAAGCTGAGTATGATCCCGGTTTCTTGTCTTCTAGAAGTTATGCTTGACAATGTCAGGTATTCAAGAGATACAAAGCTTAGCATTTTGTTAGTTC

upper sequence: GLYMA05G31940.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv07s0031g01860.t01 (Vitis vinifera), 3'ss of exon 3
-gtaactagattttttacaaattttttgaaagtatcaaattttaacactgccagtgacaaaggtaggtatttatagtgtttccttctcttgaaatgaaaacttcagATTGCTAAGCTGAGTATGATTCCAGTATCTTGTTTCCTGGAAGTTATCTTGGATAATGTGCGATATTCAAGGGACACAAAACTTAGCATTTCTCTAGTTC
   |  |        | |  | ||||||      |     | | | | |     |  ||||| ||   | ||||     ||| ||||||| |||     |  ||||||||| |||||||||||||| ||||| || ||| | || |||||| | ||||| ||  |||| || ||||||||||| || |||||||| ||  ||||||
gtcagttttgggaactgctgactttttgttctccttttgctctcatatttttttt--caaagttaca-agttatg----ttctttctcttcaaactttgatgtcagATTGCGAAGCTGAGTATGATCCCAGTCTCATGTGTTCTCGAAGTTGTGTTGGACAAGATGCGGTACTCAAGGGACACCAAGCTTAGCATATCATTAGTTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208295895|gb|GE090871.1|GE090871
EST:     GGTTTCTATCAG                         ATTGCTAAGCTGAGTATGATTCCAGTATCTTGTTTCCTGGAAGTTATCTTG
genomic: GGTTTCTATCAGgtaactagat ... aaaacttcagATTGCTAAGCTGAGTATGATTCCAGTATCTTGTTTCCTGGAAGTTATCTTG
EST: gi|207840070|gb|GD809591.1|GD809591
EST:     TTGTCGGCATGAACGTGAGTTTGATGTGGAATTCTGTCGGTTTCTATCAG                         ATTGCTAAGCTGAGTATGATTCCAGTATCTTGTTTCCTGGAAGTTATCTTG
genomic: TTGTCGGCATGAACGTGAGTTTGATGTGGAATTCTGTCGGTTTCTATCAGgtaactagat ... aaaacttcagATTGCTAAGCTGAGTATGATTCCAGTATCTTGTTTCCTGGAAGTTATCTTG
EST: gi|15200449|gb|BI424355.1|BI424355
EST:     TTGTCGGCATGAACGTGAGTTTGATGTGGAATTCTGTCGGTTTCTATCAG                         ATTGCTAAGCTGAGTATGATTCCAGTATCTTGTTTCCTGGAAGTTATCTTG
genomic: TTGTCGGCATGAACGTGAGTTTGATGTGGAATTCTGTCGGTTTCTATCAGgtaactagat ... aaaacttcagATTGCTAAGCTGAGTATGATTCCAGTATCTTGTTTCCTGGAAGTTATCTTG
EST: gi|193411723|gb|FK381658.1|FK381658
EST:     TTGTCGGCATGAACGTGAGTTTGATGTGGAATTCTGTCGGTTTCTATCAG                         ATTGCTAAGCTGAGTATGATTCCAGTATCTTGTTTCCTGGAAGTTATCTTG
genomic: TTGTCGGCATGAACGTGAGTTTGATGTGGAATTCTGTCGGTTTCTATCAGgtaactagat ... aaaacttcagATTGCTAAGCTGAGTATGATTCCAGTATCTTGTTTCCTGGAAGTTATCTTG
EST: gi|298180404|gb|HO021957.1|HO021957
EST:     TTGTCGGCATGAACGTGAGTTTGATGTGGAATTCTGTCGGTTTCTATCAG                         ATTGCTAAGCTGAGTATGATTCCAGTATCTTGTTTCCTGGAAGTTATCTTG
genomic: TTGTCGGCATGAACGTGAGTTTGATGTGGAATTCTGTCGGTTTCTATCAGgtaactagat ... aaaacttcagATTGCTAAGCTGAGTATGATTCCAGTATCTTGTTTCCTGGAAGTTATCTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagtgacaaaggtaggtatttatagtgtttccttctcttgaaatgaaaacttcagATTGCTAAGCTGAGTATGATTCCAGTATCTTGTTTCCTGGAAGTTATCTTGGATAATGTGCGATATTCAAGGGACACAAAACTTAGCATTTCTCTAGTTC
                tatttatagtgttt  TA-rich tract