1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgcatattatttgcttggttgtgcatattcttttatagtgattagtgacctagtgtgtctgtcttagcaatatcaaagctctttacttttgatatttcagCATATCGGAAGCTTGCCCGGAATTATCATCCAGATGTCAACAA
species | Glycine max |
transcript | GLYMA05G31080.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTCTGTCCTTGGGGTTTCAAGAAATGCTAGTAAATCTGAAATTAAGAGCG CATATCGGAAGCTTGCCCGGAATTATCATCCAGATGTCAACAAEST: gi|26057478|gb|CA800392.1|CA800392
genomic: TTCTGTCCTTGGGGTTTCAAGAAATGCTAGTAAATCTGAAATTAAGAGCGgtattttcta ... gatatttcagCATATCGGAAGCTTGCCCGGAATTATCATCCAGATGTCAACAA
EST: TTCTGTCCTTGGGGTTTCAAGAAATGCTAGTAAATCTGAAATTAAGAGCG CATATCGGAAGCTTGCCCGGAATTATCATCCAGATGTCAACAA
genomic: TTCTGTCCTTGGGGTTTCAAGAAATGCTAGTAAATCTGAAATTAAGAGCGgtattttcta ... gatatttcagCATATCGGAAGCTTGCCCGGAATTATCATCCAGATGTCAACAA
tgacctagtgtgtctgtcttagcaatatcaaagctctttacttttgatatttcagCATATCGGAAGCTTGCCCGGAATTATCATCCAGATGTCAACAA
ttttgat putative branch site (score: 4)
tttacttttgatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcatattatttgcttggttgtgcatattcttttatagtgattagtgacctagtgtgtctgtcttagcaatatcaaagctctttacttttgatatttcagCATATCGGAAGCTTGCCCGGAATTATCATCCAGATGTCAACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
tgcatat
- - - - - - - - ggttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - gtgtctg