1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatgttgcgtgactcatttaaatttgcatgttattccctctgttgttttgaattttcgttcattttccattaaatatcctgcagGAAGGTTCCTAGGTTTCGAAGGCCAAATCGTTACATGCCGTACCACTAGAAGTTTCATACGGAAAGTGTTATATTGGGAAGATGGTGCATCCTGGAGCAG
species | Glycine max |
transcript | GLYMA05G31030.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTCAGGAGGCCATATACTCCTCCTTACTTTTACTCCCCTTATGGATACGG GAAGGTTCCTAGGTTTCGAAGGCCAAATCGTTACATGCCGTACCACTAGAAEST: gi|192304231|gb|FG993529.1|FG993529
genomic: TTCAGGAGGCCATATACTCCTCCTTACTTTTACTCCCCTTATGGATACGGgtatgttgcg ... tatcctgcagGAAGGTTCCTAGGTTTCGAAGGCCAAATCGTTACATGCCGTACCACTAGAA
EST: TTCAGGAGGCCATATACTCCTCCTTACTTTTACTCCCCTTATGGATACGG GAAGGTTCCTAGGTTTEST: gi|207734893|gb|GD710184.1|GD710184
genomic: TTCAGGAGGCCATATACTCCTCCTTACTTTTACTCCCCTTATGGATACGGgtatgttgcg ... tatcctgcagGAAGGTTCCTAGGTTT
EST: ATACTCCTCCTTACTTTTACTCCCCTTATGGATACGG GAAGGTTCCTAGGTTTCGAAGGCCAAATCGTTACATGCCGTACCACTAGAA
genomic: ATACTCCTCCTTACTTTTACTCCCCTTATGGATACGGgtatgttgcg ... tatcctgcagGAAGGTTCCTAGGTTTCGAAGGCCAAATCGTTACATGCCGTACCACTAGAA
gttattccctctgttgttttgaattttcgttcattttccattaaatatcctgcagGAAGGTTCCTAGGTTTCGAAGGCCAAATCGTTACATGCCGTACCACTAGAAGTTTCATACGGAAAGTGTTATATTGGGAAGATGGTGCATCCTGGAGCAG
attttccattaaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttgcgtgactcatttaaatttgcatgttattccctctgttgttttgaattttcgttcattttccattaaatatcctgcagGAAGGTTCCTAGGTTTCGAAGGCCAAATCGTTACATGCCGTACCACTAGAAGTTTCATACGGAAAGTGTTATATTGGGAAGATGGTGCATCCTGGAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG