1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...gttttcttcttccattgctagggatacagacaaacagtttgttattgatcttttattttggggttttactttaagaacttctctttcattgcattttcagCTATTGCAGCAGAAGTTACTGTAGTGCCACCATCCCGATTGATGGCTTTAATTGGTCAGGCTTTGAAGTGGCAGCAGCATCAAG
species | Glycine max |
transcript | GLYMA05G30430.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCTTATCAAGACTCAACAAAAGAGAAGCGACGTGCACAAATAGCCCAAG CTATTGCAGCAGAAGTTACTEST: gi|151408433|gb|EV278241.1|EV278241
genomic: GCTTATCAAGACTCAACAAAAGAGAAGCGACGTGCACAAATAGCCCAAGgtttctgtct ... gcattttcagCTATTGCAGCAGAAGTTACT
EST: GCTTATCAAGACTCAACAAAAGAGAAAGCGACGTGCACAAATAGCCCAAG CTATTGCAGCAGAAGTTACTGTAGTGCCACCATCCCGATTGATGGCTTTAAEST: gi|208188792|gb|GD981376.1|GD981376
genomic: GCTTATCAAGACTCAACAAAAGAG-AAGCGACGTGCACAAATAGCCCAAGgtttctgtct ... gcattttcagCTATTGCAGCAGAAGTTACTGTAGTGCCACCATCCCGATTGATGGCTTTAA
EST: GCTTATCAAGACTCAACAAAAGAGAAGCGACGTGCACAAATAGCCCAAG CTATTGCAGCAGAAGTTACTGTAGTGCCACCATCCCGATTGATGGCTTTAAEST: gi|192300630|gb|FG989632.1|FG989632
genomic: GCTTATCAAGACTCAACAAAAGAGAAGCGACGTGCACAAATAGCCCAAGgtttctgtct ... gcattttcagCTATTGCAGCAGAAGTTACTGTAGTGCCACCATCCCGATTGATGGCTTTAA
EST: GCTTATCAAGACTCAACAAAAGAGAAGCGACGTGCACAAATAGCCCAAG CTATTGCAGCAGAAGTTACTGTAGTGCCACCATCCCGATTGATGGCTTTAAEST: gi|213609045|gb|DB958814.1|DB958814
genomic: GCTTATCAAGACTCAACAAAAGAGAAGCGACGTGCACAAATAGCCCAAGgtttctgtct ... gcattttcagCTATTGCAGCAGAAGTTACTGTAGTGCCACCATCCCGATTGATGGCTTTAA
EST: GCTTATCAAGACTCAACAAAAGAGAAGCGACGTGCACAAATAGCCCAAG CTATTGCAGCAGAAGTTACTGTAGTGCCACCATCCCGATTGATGGCTTTAA
genomic: GCTTATCAAGACTCAACAAAAGAGAAGCGACGTGCACAAATAGCCCAAGgtttctgtct ... gcattttcagCTATTGCAGCAGAAGTTACTGTAGTGCCACCATCCCGATTGATGGCTTTAA
tgatcttttattttggggttttactttaagaacttctctttcattgcattttcagCTATTGCAGCAGAAGTTACTGTAGTGCCACCATCCCGATTGATGGCTTTAATTGGTCAGGCTTTGAAGTGGCAGCAGCATCAAG
tattgat putative branch site (score: 3)
cttctctttcattgca putative PPT
ttttactttaagaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttcttcttccattgctagggatacagacaaacagtttgttattgatcttttattttggggttttactttaagaacttctctttcattgcattttcagCTATTGCAGCAGAAGTTACTGTAGTGCCACCATCCCGATTGATGGCTTTAATTGGTCAGGCTTTGAAGTGGCAGCAGCATCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG