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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtccagaactgcctcttcttctttctctttatttgatatgattttgtagttttgtacttcacatgttagtcatttatctaacacttcctttttcattttaagGATATGTTGGTGAGTTACATCCTGATAAGAACAGTGATAATGGCAAGCATGTCATTTACACACACAAAAACATTATTGTTAAATACAACAATGATCAG

Basic information

species Glycine max
transcript GLYMA05G30210.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G30210.1 (Glycine max), 3'ss of exon 4
lower sequence: AT1G10950.1 (Arabidopsis thaliana), 3'ss of exon 4
gtatgtccagaactgcctcttcttctttctctttatttgatatgattttgtagttttgtacttcacatgttagtcatttatctaacacttcctttttcatttta-agGATATGTTGGTGAGTTACATCCTGATAAGAACAGTGATAATGGCAAGCATGTCATTTACACACACAAAAACATTATTGTTAAATACAACAATGATCAG
         | |    || |   | |||   |  |      |  ||||     || ||| |||    ||||    ||   | ||| |||  ||  ||  | ||  ||| | ||| |||||| | |||||||| || || ||||| || |||||||||||  |||||||||| || |||||| |||| ||||||||||| || |||
---------gtatgaactttgtatatttacttgaaacatccaaaattt----attatgttctttgtttgttttatatagttttaatactgtctcattgctgttgtagGCTTTGTGGGTGAGCTGCATCCTGACAAAAATAGTGAAAACGGCAAGCATGTTCTTTACACACATAAGAACATTGTTGTCAAATACAACAAAGACCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193398109|gb|FK361231.1|FK361231
EST:     TTCATGGATGATCTACCTTTGTGGG                         GATATGTTGGCGAGTTACAT
genomic: TTCATGGATGATCTACCTTTGTGGGgtatgtccag ... tcattttaagGATATGTTGGTGAGTTACAT
EST: gi|208231223|gb|GE033482.1|GE033482
EST:     TTCATGGATGATCTACCTTTGTGGG                         GATATGTTGGTGAGTTACATCCTGATAAGAACAGTGATAATGGCAAGCATG
genomic: TTCATGGATGATCTACCTTTGTGGGgtatgtccag ... tcattttaagGATATGTTGGTGAGTTACATCCTGATAAGAACAGTGATAATGGCAAGCATG
EST: gi|208169351|gb|GD972282.1|GD972282
EST:     TTCATGGATGATCTACCTTTGTGGG                         GATATGTTGGTGAGTT
genomic: TTCATGGATGATCTACCTTTGTGGGgtatgtccag ... tcattttaagGATATGTTGGTGAGTT
EST: gi|208261580|gb|GE060425.1|GE060425
EST:     CTACCTTTGT-GG                         GATATGTTGGTGAGTTACATCCTGATAAGAACAGTGATAATGGCAAGCATG
genomic: CTACCTTTGTGGGgtatgtccag ... tcattttaagGATATGTTGGTGAGTTACATCCTGATAAGAACAGTGATAATGGCAAGCATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttttgtacttcacatgttagtcatttatctaacacttcctttttcattttaagGATATGTTGGTGAGTTACATCCTGATAAGAACAGTGATAATGGCAAGCATGTCATTTACACACACAAAAACATTATTGTTAAATACAACAATGATCAG
                            atctaac  putative branch site (score: 2)
                                  cacttcctttttcatt  CT-rich tract
                                         tttttcattttaa  TA-rich tract