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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgccatcttactttatccgtattctgttctatcaattttttattcttttgggacaataatttgtaatggaatgaatgctacattcacttcctgcagCATGAAGTGGATTAAAGTCAAGATGGAACAACTTGGGGTGTTGGGCAATCCTAACTACAAAATCACCGCACTTCTTGACCACATGGCAATGATCACGGTT

Basic information

species Glycine max
transcript GLYMA05G30160.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G30160.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv12s0035g00640.t01 (Vitis vinifera), 3'ss of exon 4
-gtactgccatcttactttatccgtattctgtt--ctatcaattttttattcttttgggacaataatttgtaatggaatgaatgctacattcacttcctgcagCATGAAGTGGATTAAAGTCAAGATGGAACAACTTGGGGTGTTGGGCAATCCTAACTACAAAATCACCGCACTTCTTGACCACATGGCAATGATCACGGTT
 || ||   ||   | |   |    |||  | |  || |  | |  || |||  || ||   |||   | | |||  ||   || |   ||  ||  |||||||||||||||| || || | ||||||| ||||||||||||  |   ||||||||| ||||| || || || ||||| |||||  | |||||||| || |||
tgtccttaaatggaagtgcctttcaattgaggtgcctgttgaatcatttttcccttagggggata---tatgatgctatagttgatctgtttcctatctgcagCATGAAGTGGGTTGAATTGAAGATGGGACAACTTGGGGTACTCAACAATCCTAATTACAAGATTACAGCTCTTCTGGACCATTTAGCAATGATTACAGTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193631354|gb|FK583731.1|FK583731
EST:     CTTACTTCTGTTTATTCGGAGTATGACATTATGATATGGTCTGCAACCAG                         CATGAAGTGGATTAAAG-CAAGAT
genomic: CTTACTTCTGTTTATTCGGAGTATGACATTATGATATGGTCTGCAACCAGgtactgccat ... cttcctgcagCATGAAGTGGATTAAAGTCAAGAT
EST: gi|151393341|gb|EV263216.1|EV263216
EST:     CTTACTTCTGTTTATTCGGAGTATGACATTATGATATGGTCTGCAACCAG                         CATGAAGTGGATCAAAGTCAAGATGGAACAACTTGGGGTGTTGGGCAATCC
genomic: CTTACTTCTGTTTATTCGGAGTATGACATTATGATATGGTCTGCAACCAGgtactgccat ... cttcctgcagCATGAAGTGGATTAAAGTCAAGATGGAACAACTTGGGGTGTTGGGCAATCC
EST: gi|192305352|gb|FG994034.1|FG994034
EST:     ATGATATGGTCTGCAACCAG                         CATGAAGTGGATTAAAGTCAAGATGGAACAACTTGGGGTGTTGGGCAATCC
genomic: ATGATATGGTCTGCAACCAGgtactgccat ... cttcctgcagCATGAAGTGGATTAAAGTCAAGATGGAACAACTTGGGGTGTTGGGCAATCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcttttgggacaataatttgtaatggaatgaatgctacattcacttcctgcagCATGAAGTGGATTAAAGTCAAGATGGAACAACTTGGGGTGTTGGGCAATCCTAACTACAAAATCACCGCACTTCTTGACCACATGGCAATGATCACGGTT
                                         ttcacttcct  CT-rich tract
           acaataatttgtaat  TA-rich tract