1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaataaaggctgaaaataaaaattactttgaaagtatatgtcagccttagcaatattctgacttctatattgttttactattacagCTTGTGTCTCAGGTGTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACTATTACTTCATCAG
species | Glycine max |
transcript | GLYMA05G29410.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAACTGGATATACCGCTATCTGACTGAGCCACATTTTACTAGATGGATAG CTTGTGTCTCAGGTGTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACTEST: gi|192294404|gb|FG987333.1|FG987333
genomic: GAACTGGATATACCGCTATCTGACTGAGCCACATTTTACTAGATGGATAGgtaataaagg ... actattacagCTTGTGTCTCAGGTGTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACT
EST: GAACTGGATATACCGCTATCTGACTGAGCCACATTTTACTAGATGGATAG CTTGTGTCTCAG-TGTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACTEST: gi|16343489|gb|BI969084.1|BI969084
genomic: GAACTGGATATACCGCTATCTGACTGAGCCACATTTTACTAGATGGATAGgtaataaagg ... actattacagCTTGTGTCTCAGGTGTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACT
EST: GAACTGGATATACCGCTATCTGACTGAGCCACATTTTACTAGATGGATAG CTTGTGTCTCAGGTGTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACTEST: gi|193492847|gb|FK459569.1|FK459569
genomic: GAACTGGATATACCGCTATCTGACTGAGCCACATTTTACTAGATGGATAGgtaataaagg ... actattacagCTTGTGTCTCAGGTGTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACT
EST: GAACTGGATATACCGCTATCTGACTGAGCCACATTTTACTAGATGGATAG CTTGTGTCTCAGGTGTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACTEST: gi|22933449|gb|BU550588.1|BU550588
genomic: GAACTGGATATACCGCTATCTGACTGAGCCACATTTTACTAGATGGATAGgtaataaagg ... actattacagCTTGTGTCTCAGGTGTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACT
EST: GAACTGGATATACCGCTATCTGACTGAGCCACATTTTACTAGATGGATAG CTTGTGTCTCAGGTGTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACTEST: gi|6726058|gb|AW310457.1|AW310457
genomic: GAACTGGATATACCGCTATCTGACTGAGCCACATTTTACTAGATGGATAGgtaataaagg ... actattacagCTTGTGTCTCAGGTGTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACT
EST: GAACTGGATATACCGCTATCTGACTGAGCCACATTTTACTAGATGGATAG CTTGTGTCTCAGGTGTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACTEST: gi|6502251|gb|AW203624.1|AW203624
genomic: GAACTGGATATACCGCTATCTGACTGAGCCACATTTTACTAGATGGATAGgtaataaagg ... actattacagCTTGTGTCTCAGGTGTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACT
EST: GAACTGGATATACCGCTATCTGACTGAGCCACATTGTACTACATGGATAG CTTGTGTCTCATGTGTTGTACAGACAGEST: gi|192300473|gb|FG991485.1|FG991485
genomic: GAACTGGATATACCGCTATCTGACTGAGCCACATTTTACTAGATGGATAGgtaataaagg ... actattacagCTTGTGTCTCAGGTGTTGTTCAGACAG
EST: GAACTGGATATACCGCTATCTGACTGAGCCACATTTTACTAGATGGATAG CTTGTGTCTCATGTGTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACT
genomic: GAACTGGATATACCGCTATCTGACTGAGCCACATTTTACTAGATGGATAGgtaataaagg ... actattacagCTTGTGTCTCAGGTGTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACT
aagtatatgtcagccttagcaatattctgacttctatattgttttactattacagCTTGTGTCTCAGGTGTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACTATTACTTCATCAG
ttctgac putative branch site (score: 2)
ttttact putative PPT
ttctatattgttttac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataaaggctgaaaataaaaattactttgaaagtatatgtcagccttagcaatattctgacttctatattgttttactattacagCTTGTGTCTCAGGTGTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACTATTACTTCATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT