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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgacttttattttattttcctgacagtattattgtttaattgcccacctcttcgtgtactatgtgccaaagttggtgcctgcttaacaaatttaacacagtactcttcatgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGATACTCTGAGCGAGGAGTCTTACAAAGACAGCACCCTAATTATGCAGCTT

Basic information

species Glycine max
transcript GLYMA05G29080.7
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G29080.7 (Glycine max), 3'ss of exon 4
lower sequence: Vv19s0014g01420.t01 (Vitis vinifera), 3'ss of exon 4
gtatgactt---ttattttattttcctgacagtattattgtttaattgcccacctctt------cgtgtactatgtgccaa-----agttggtgcctgcttaacaaatttaacacagtactc-ttcatgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGATACTCTGAGCGAGGAGTCTTACAAAGACAGCACCCTAATTATGCAGCTT
|||||  |    |||||| || ||  ||  | ||| ||   | |  |    |  ||||       |    || | ||  ||     |     |        ||  ||| | |  | ||  |  ||  | ||| ||||| || |||||||| ||||| || ||||||||||| || || |||||||| || || |||||||| |||||||||||||||||  ||||||||||||| 
gtatgcttgcaattatttcatatttttg-tattatgatgcctgatctataaagttcttgtacgatggaatctttttgttaagaaacaacaaattttattgcaaggaatcttatcccgtggttgtttgtttcttagGGCTTGCCACCTTGCAAAGCAAGCTTTTGATGAAGCTATTTCAGAGTTGGACACCCTTAGCGAGGAATCTTACAAAGACAGCACTTTAATTATGCAGCTC

upper sequence: GLYMA05G29080.7 (Glycine max), 3'ss of exon 4
lower sequence: Vv10s0003g01240.t01 (Vitis vinifera), 3'ss of exon 4
gtatgacttttattttattttcctgacagtattattgtttaattgcccacctcttcgtgtactatgtgccaaagttggtgcctgcttaacaaatttaacacagtactcttcatgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGATACTCTGAGCGAGGAGTCTTACAAAGACAGCACCCTAATTATGCAGCTT
     | |  |||  || | | | || |   ||    | |||| | || | | || ||||  | ||      | ||  || |   || | |   || |||  |||    | || || ||||||||| ||||| || ||||| || ||||||||||| ||||| ||||||||||||||||  |||||||||||||| || |||||  | |||||||| |||
---gtattcctatcgtaatcttcagagaaagttc---tgtaatagtcc-cttttttgtgtcttttg------attttttgtccatttgaaactgtttacatggtaa--cttatttcccagGGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGATACTCTGAATGAGGAGTCTTACAAGGATAGCACATTGATTATGCAACTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254327926|gb|GR834891.1|GR834891
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
EST: gi|208309137|gb|GE102061.1|GE102061
EST:     AACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: AACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
EST: gi|207702007|gb|GD683881.1|GD683881
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
EST: gi|4301911|gb|AI443258.1|AI443258
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
EST: gi|254328642|gb|GR833014.1|GR833014
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
EST: gi|254333165|gb|GR850415.1|GR850415
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
EST: gi|208055190|gb|GD853711.1|GD853711
EST:     TCTTTTATTACGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: TCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
EST: gi|10709621|gb|BF009345.1|BF009345
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
EST: gi|254328641|gb|GR833013.1|GR833013
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
EST: gi|208334430|gb|GE126621.1|GE126621
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
EST: gi|193540325|gb|FK494815.1|FK494815
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGA
EST: gi|208337317|gb|GE133089.1|GE133089
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
EST: gi|13477504|gb|BG507360.1|BG507360
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
EST: gi|17519552|gb|BM188594.1|BM188594
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCANGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
EST: gi|17518586|gb|BM187628.1|BM187628
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
EST: gi|10846261|gb|BF069189.1|BF069189
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
EST: gi|208228351|gb|GE025563.1|GE025563
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
EST: gi|14011311|gb|BG726242.1|BG726242
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
EST: gi|17022285|gb|BM093319.1|BM093319
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
EST: gi|192309538|gb|FK000970.1|FK000970
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATTTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
EST: gi|193303799|gb|FK271691.1|FK271691
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
EST: gi|5666653|gb|AI930689.1|AI930689
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGANATTNTGAACTCTCCTGAAAA                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAATGCA-TCTCTGAGTTTG
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAA-GCAATCTCTGAGTTGG
EST: gi|193666143|gb|FK612202.1|FK612202
EST:     TTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: TTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
EST: gi|193570513|gb|FK524058.1|FK524058
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
EST: gi|193619419|gb|FK571287.1|FK571287
EST:     CTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: CTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
EST: gi|254335227|gb|GR846724.1|GR846724
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
EST: gi|193374759|gb|FK341279.1|FK341279
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
EST: gi|193706072|gb|FK648496.1|FK648496
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGT
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGT
EST: gi|151402597|gb|EV272410.1|EV272410
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
EST: gi|208040627|gb|GD843807.1|GD843807
EST:     CTTTGAACTTCTCTGTCTTTTATTATGAAATTTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: CTTTGAACTTCTCTGTCTTTTATTATGAAA-TTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
EST: gi|208185797|gb|GD983822.1|GD983822
EST:     AACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: AACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
EST: gi|193706655|gb|FK643642.1|FK643642
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
EST: gi|254333164|gb|GR850414.1|GR850414
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
EST: gi|193564590|gb|FK521427.1|FK521427
EST:     TCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: TCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
EST: gi|208286315|gb|GE087787.1|GE087787
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
EST: gi|254347253|gb|GR853502.1|GR853502
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
EST: gi|21638441|gb|BM139487.1|BM139487
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
EST: gi|193518055|gb|FK473526.1|FK473526
EST:     TTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: TTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
EST: gi|254336492|gb|GR842671.1|GR842671
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
EST: gi|193449399|gb|FK412878.1|FK412878
EST:     AACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: AACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
EST: gi|151394632|gb|EV264503.1|EV264503
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
EST: gi|7233997|gb|AW569338.1|AW569338
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
EST: gi|207838555|gb|GD812415.1|GD812415
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
EST: gi|6951823|gb|AW423891.1|AW423891
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
EST: gi|208120297|gb|GD916676.1|GD916676
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACCCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
EST: gi|207835864|gb|GD809235.1|GD809235
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
EST: gi|207840825|gb|GD811018.1|GD811018
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
EST: gi|7795822|gb|AW781219.1|AW781219
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
EST: gi|254335228|gb|GR846725.1|GR846725
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
EST: gi|207705808|gb|GD686884.1|GD686884
EST:     GCTTTGATCTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAA
EST: gi|207760025|gb|GD733152.1|GD733152
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
EST: gi|193585622|gb|FK542072.1|FK542072
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
EST: gi|6482683|gb|AW201922.1|AW201922
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTT-GAACTCTCCTGAAAG                         GCCCTG-CACCTTGC
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGC
EST: gi|254336493|gb|GR842672.1|GR842672
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
EST: gi|208289470|gb|GE085833.1|GE085833
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
EST: gi|193417633|gb|FK382107.1|FK382107
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgccaaagttggtgcctgcttaacaaatttaacacagtactcttcatgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGATACTCTGAGCGAGGAGTCTTACAAAGACAGCACCCTAATTATGCAGCTT
                           atttaac  putative branch site (score: 3)
                                      tactcttc  putative PPT
                    ttaacaaatttaaca  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgacttttattttattttcctgacagtattattgtttaattgcccacctcttcgtgtactatgtgccaaagttggtgcctgcttaacaaatttaacacagtactcttcatgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGATACTCTGAGCGAGGAGTCTTACAAAGACAGCACCCTAATTATGCAGCTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT