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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggtaattgtgtcttaataatttcttctgttactctaccttcctaagtgatctttttgcatccatgctttatggaaaaatgtgtgcaattgttttttccagGTTTTGATATGCCGAAATGAGGCCGAAAAATGCTTAATAGAAACATCTATCAATTCATTGCGGATAAGTCTCAAG

Basic information

species Glycine max
transcript GLYMA05G28650.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G28650.1 (Glycine max), 3'ss of exon 4
lower sequence: AT4G14147.1 (Arabidopsis thaliana), 3'ss of exon 5
ggtaattgtgtcttaataatttcttctgttactctaccttcctaa-gtgatctttttgcatccatgctttatggaaaaatgtgtgcaattgttttttccagGTTTTGATATGCCGAAATGAGGCCGAAAAATGCTTAATAGAAACATCTATCAATTCATTGCGGATAAGTCTCAAG
 ||||  |    ||| |  ||||         |   | ||  ||  |   | | ||   | | | | ||| | |   | ||       |||    || |||||||| ||||||||||||||||| ||||| || ||||||||||||||||| |||||| | |||||||| ||||||
-gtaa--gaagtttacttgtttccctcccagtttagcgttgatattgcattgtcttcttacctaggttttgtagttgactgctaagttttgcaacttgcagGTTTTAATATGCCGAAATGAGGCTGAAAAGTGTTTAATAGAAACATCTATAAATTCACTCCGGATAAGCCTCAAG

upper sequence: GLYMA05G28650.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv05s0029g01310.t01 (Vitis vinifera), 3'ss of exon 4
ggtaattgtgtcttaataatttcttctgttactctaccttcctaagtgatctt-tttgcatc-catgctttatggaaaaatgtgtgcaattgttttttccagGTTTTGATATGCCGAAATGAGGCCGAAAAATGCTTAATAGAAACATCTATCAATTCATTGCGGATAAGTCTCAAG
  ||| ||| | |  ||  |||  | |  |  |  | ||     |  ||| |   ||||||  || |  || |      || | || |||| |  |||| |||||||||| || || ||||| || ||||||||||| ||||||||||||||||||||| |||| ||||| ||||||
tataaatgt-tgtacattgttttgtgttcttttacatctaaaccatggatgtcacttgcatttcaaggattgtatttttatttttgaaattatcatttc-agGTTTTGATTTGTCGGAATGAAGCTGAAAAATGCTTGATAGAAACATCTATCAATTCACTGCGAATAAGCCTCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298169680|gb|HO021040.1|HO021040
EST:     AACCAGCCCTGAACTCCTGCTCAATCCG                         GTTTTGATATGCCGAAATGAGGCCGAAAAATGCTTAATAGAAACATCTATC
genomic: AACCAGCCCTGAACTCCTGCTCAATCCGgtaagatcca ... ttttttccagGTTTTGATATGCCGAAATGAGGCCGAAAAATGCTTAATAGAAACATCTATC
EST: gi|192327701|gb|FK020692.1|FK020692
EST:     CCAGCCCTGAACTCCTGCTCAATCCG                         GTTTTGATATGCCGAAATGAGGCCGAAAAATGCTTAATAGAAACATCTATC
genomic: CCAGCCCTGAACTCCTGCTCAATCCGgtaagatcca ... ttttttccagGTTTTGATATGCCGAAATGAGGCCGAAAAATGCTTAATAGAAACATCTATC
EST: gi|192327700|gb|FK020691.1|FK020691
EST:     AACCAGCCCTGAACTCCTGCTCAATCCG                         GTTTTGATATGCCGAAATGAGGCCGAAAAATGCTTAATAGAAACATCTATC
genomic: AACCAGCCCTGAACTCCTGCTCAATCCGgtaagatcca ... ttttttccagGTTTTGATATGCCGAAATGAGGCCGAAAAATGCTTAATAGAAACATCTATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgatctttttgcatccatgctttatggaaaaatgtgtgcaattgttttttccagGTTTTGATATGCCGAAATGAGGCCGAAAAATGCTTAATAGAAACATCTATCAATTCATTGCGGATAAGTCTCAAG
                                          ttgttttttcc  CT-rich tract
                                        aattgtttttt  TA-rich tract