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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttttcttaagattcttttttattattgatcatgtaagagcttactgtatttttaactaaaatccactgaattatttgtcctaggttctcatatattgctatttgttgtctatcaatattacatcgcttggataaaatcaatgtggagaaggctgtgaagTACATTATTTTTTTTTTCTTCGTACCCCATTGCCCAGAGGCTCTTCGCTATGCGAAGGTATGGGGGAGGGATGTTGCACGCAGCCTTACCCTTGCATATG

Basic information

species Glycine max
transcript GLYMA05G28630.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G28630.1 (Glycine max), 3'ss of exon 4
lower sequence: AT5G12210.2 (Arabidopsis thaliana), 3'ss of exon 5
gtatttttcttaagattcttttttattattgatcatgtaagagcttactgtatttttaac---taaaatc----cactgaattatttgtcctaggttctcatatattgctatttgttgtctatcaatattacatcgcttggataaaatcaatgtggagaaggctgtgaagTACATTATTTTTTTTTTCTTCGTACCCCATTGCCCAGAGGCTCTTCGCTATGCGAAGGTATGGGGGAGGGATGTTGCACGCAGCCTTACCCTTGCATATG
|| |||||| |     | | ||  |       | || ||    ||    ||  ||| |     |  ||||    ||   |  | ||| | | ||||| || || || |||||||| ||||| ||||||||  |  |  | || |||||||||||||||||||| || ||||||||| |    |       | |                                                                             
gtgtttttccttgccatgtattacaaagacatttatatatttcctgttggtgatttcactatgttgaatcttaacagcaagctgtttatgc-agGTTTTCGTACATAGCTATTTGCTGTCTCTCAATATTGAAATGTCTTGACAAAATCAATGTGGAGAAGGCCGTTAAGTACATTGTGAGCTGCAAAAACCTG----------------------------------------------------------------------------

upper sequence: GLYMA05G28630.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv15s0024g00080.t01 (Vitis vinifera), 3'ss of exon 5
gtatttttctta----agattcttttttattattgatc-atgtaagagcttactgtatttt---taact----aaaatcc---actgaattatttgtcc-taggttctcatatattgctatttgttgtctatcaatattacatcgcttggataaaatcaatgtggagaaggctgtgaagTACATTATTTTTTTTTTCTTCGTACCCCATTGCCCAGAGGCTCTTCGCTATGCGAAGGTATGGGGGAGGGATGTTGCACGCAGCCTTACCCTTGCATATG
|||||| | ||     |||| |||| ||||| | | || ||| |     | | | || |||   ||| |     || ||    |||  || | || ||  ||||||||| |||||||| || |||| ||| ||  | ||||| || ||||||||||| ||||| |||||||| ||||| |||||| |   ||         |                                                                             
gtatttcttttgcctcagatcctttgttattgtggctccatgcatcctttgaatttagtttccttaagttgaggaagtctttaactatataaattttctgtagGTTCTCTTATATTGCAATCTGTTCTCTTTCTCTGTTACAACGTTTGGATAAAATTAATGTTGAGAAGGCAGTGAACTACATTGTGAGTTGCAAAAATCTG----------------------------------------------------------------------------

upper sequence: GLYMA05G28630.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv12s0134g00150.t01 (Vitis vinifera), 3'ss of exon 5
---gtatttttcttaagattcttttttattattgatca----------tgtaagagcttactgtatttttaactaaaatcc-actgaattatttgtcc-taggttctcatatattgctatttgttgtctatcaatattacatcgcttggataaaatcaatgtggagaaggctgtgaagTACATTATTTTTTTTTTCTTCGTACCCCATTGCCCAGAGGCTCTTCGCTATGCGAAGGTATGGGGGAGGGATGTTGCACGCAGCCTTACCCTTGCATATG
    | |||| |  ||||| |||  ||||| | | |            || |  |  || |  ||| ||     |   ||  |||  |  |||| |   ||||||||| ||||||||||| |||||||| ||  |||| ||  |  |||| |||||||||||||||||||||||||| |||||  |   ||         |                                                                             
gtattcttttccacaagatccttcattattctgggttcatgattcctttgaagtaagtttccatatgttctggaagtctctgactatagaatttttttgtagGTTCTCTTATATTGCTATATGTTGTCTCTCTCTATTGCAATGTCTGGACAAAATCAATGTGGAGAAGGCTGTGAACTACATCGTGAGTTGCAAAAATCTG----------------------------------------------------------------------------


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtctatcaatattacatcgcttggataaaatcaatgtggagaaggctgtgaagTACATTATTTTTTTTTTCTTCGTACCCCATTGCCCAGAGGCTCTTCGCTATGCGAAGGTATGGGGGAGGGATGTTGCACGCAGCCTTACCCTTGCATATG
     tatcaatattacat  TA-rich tract