Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gacttgtgatctttggttatgaccctgctacctcccacccccggtatccctacatgttttccacaaattgaaagatcttacactttttttcactgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCTGCAATACTTGAAATCCCTTCTAAAGATCATCCTTATGATCCGGCACATG

Basic information

species Glycine max
transcript GLYMA05G26580.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G26580.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os02g57854.1 (Oryza sativa), 3'ss of exon 4
gacttgtgatctttggttatgaccct---gctacctcccacc-cccggtatccctacatgttttccacaaattgaaagatcttacactttttttcactgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCTGCAATACTTGAAATCCCTTCTAAAGATCATCCTTATGATCCGGCACATG
  |  |   || |  ||| |   |||   |  |  |    |  ||    ||    |   ||| |  ||||||     |||  |   || ||||||| |   |||||||| || |||||||||||  |||| ||||| || |||| |||||||||||| ||| | || ||||| || || |||||||| ||||| || ||||| |
-gcaagccttcgt-agttgtagtccttaggaaattttgtgcagcctaaaatggtcatccgttgtagacaaatcct--gattgttttctgtttttcatttgacagGTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCTGCTATATTGGAGATCCCATCCAAGGATCATCCGTATGACCCAGCACACG

upper sequence: GLYMA05G26580.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G008232_T01 (Zea mays), 3'ss of exon 3
gacttgtgatctttggttatgaccctgctacctcccacccccggtatccctacatgttttccacaaattgaaagatcttacactttttttcactgtg-----cagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCTGCAATACTTGAAATCCCTTCTAAAGATCATCCTTATGATCCGGCACATG
 | |  ||| |  | || |  ||  | | | ||            |  |   ||| ||    | || ||| |         |  | | || | ||||     ||| |||| || |||||||||||| |||| ||||| || ||||||||||| ||||| || || || ||||| || || || ||||| |||||||| || || |
aaatcatgaacagtagt-accactgtaccagctaggtaatagaagaaacgcccatctt----ataagttgtattcctgctgatgtctattaattgtgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCTGCTATTCTGGAGATCCCATCCAAGGACCATCCATATGATCCAGCGCACG

upper sequence: GLYMA05G26580.1 (Glycine max), 3'ss of exon 4
lower sequence: AT4G02620.1 (Arabidopsis thaliana), 3'ss of exon 4
gacttgtgatct--ttggttatgaccctgctacctcccacccccggtatccctacatgttttccacaaattgaaagatcttac-actttttttcac-tgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCTGCAATACTTGAAATCCCTTCTAAAGATCATCCTTATGATCCGGCACATG
 || ||  ||    |  |   |  | ||     |||    |  |    ||  |   |  |||| ||||  | ||| || | |  |     |||||    || || | || ||||||||  |||| ||||| ||||| || |||||||| |||||||||||  | || |||||||| || || ||||| |||||||| || ||||
-acatgaaatagaatgaggcctatctctatgtgctctatactgcaaagtctgt---ttctttctacaatgtcaaaaatgtaatgagaaagtttcatgcttgtagATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCTGCAATCTTGGAGATCCCTTCCAAGGACCATCCCTATGATCCTGCTCATG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15284995|gb|BI468886.1|BI468886
EST:     AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT                         GTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
genomic: AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATATgtaagtcata ... cactgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
EST: gi|192325651|gb|FK019507.1|FK019507
EST:     AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT                         GTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
genomic: AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATATgtaagtcata ... cactgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
EST: gi|298198469|gb|HO040008.1|HO040008
EST:     AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT                         GTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
genomic: AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATATgtaagtcata ... cactgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
EST: gi|298168456|gb|HO009386.1|HO009386
EST:     AGGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT                         GTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
genomic: AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATATgtaagtcata ... cactgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
EST: gi|192307401|gb|FK000757.1|FK000757
EST:     AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT                         GTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
genomic: AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATATgtaagtcata ... cactgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
EST: gi|24135940|gb|BU926450.1|BU926450
EST:     AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT                         GTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
genomic: AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATATgtaagtcata ... cactgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
EST: gi|15338076|gb|BI498732.1|BI498732
EST:     AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT                         GTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
genomic: AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATATgtaagtcata ... cactgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
EST: gi|58016272|gb|CX703014.1|CX703014
EST:     AGGAATTTACGACAAGGGAGGATGTTCCAATTGTGCTGATTAGCCAATAT                         GTCGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCGT
genomic: AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATATgtaagtcata ... cactgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
EST: gi|4293148|gb|AI442006.1|AI442006
EST:     AAGAATTTACAACAAGGGAGGATGTTGCAATTGCGCTGATTAGCCAATAT                         GTTGCAAATATGATAAGGTTTCTGGATGATAGTTATAACAAGCCCGTTCCT
genomic: AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATATgtaagtcata ... cactgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
EST: gi|10236403|gb|BE805291.1|BE805291
EST:     AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT                         GTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
genomic: AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATATgtaagtcata ... cactgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
EST: gi|298190735|gb|HO032856.1|HO032856
EST:     AAGAATTTACAATAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT                         GTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
genomic: AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATATgtaagtcata ... cactgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
EST: gi|19268945|gb|BM885201.1|BM885201
EST:     AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT                         GTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
genomic: AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATATgtaagtcata ... cactgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
EST: gi|151396796|gb|EV266669.1|EV266669
EST:     AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT                         GTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
genomic: AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATATgtaagtcata ... cactgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
EST: gi|192327761|gb|FK022054.1|FK022054
EST:     AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT                         GTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
genomic: AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATATgtaagtcata ... cactgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
EST: gi|151406264|gb|EV276079.1|EV276079
EST:     AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT                         GTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
genomic: AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATATgtaagtcata ... cactgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
EST: gi|193319552|gb|FK285115.1|FK285115
EST:     AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT                         GTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
genomic: AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATATgtaagtcata ... cactgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
EST: gi|298188112|gb|HO032069.1|HO032069
EST:     AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT                         GTTGCAAATATGATAAGGTTTCTGGTTGATAGTTATAACAAGCCCGTTCCT
genomic: AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATATgtaagtcata ... cactgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
EST: gi|151393484|gb|EV263359.1|EV263359
EST:     AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT                         GTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
genomic: AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATATgtaagtcata ... cactgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
EST: gi|193324668|gb|FK290960.1|FK290960
EST:     AGAATTTACAGCAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAAATAT                         GTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCC
genomic: AGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAA-TATgtaagtcata ... cactgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCC
EST: gi|31473983|gb|CD416011.1|CD416011
EST:     AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT                         GTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
genomic: AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATATgtaagtcata ... cactgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
EST: gi|15001194|gb|BI322008.1|BI322008
EST:     AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT                         GTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
genomic: AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATATgtaagtcata ... cactgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
EST: gi|11690347|gb|BF598023.1|BF598023
EST:     AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT                         GTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
genomic: AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATATgtaagtcata ... cactgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
EST: gi|10846200|gb|BF071276.1|BF071276
EST:     AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT                         GTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
genomic: AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATATgtaagtcata ... cactgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
EST: gi|19938564|gb|BQ081779.1|BQ081779
EST:     AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT                         GTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
genomic: AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATATgtaagtcata ... cactgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
EST: gi|10236371|gb|BE805259.1|BE805259
EST:     AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT                         GTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
genomic: AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATATgtaagtcata ... cactgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
EST: gi|192304577|gb|FG997921.1|FG997921
EST:     AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT                         GTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
genomic: AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATATgtaagtcata ... cactgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
EST: gi|27425725|gb|CA937245.1|CA937245
EST:     AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT                         GTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
genomic: AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATATgtaagtcata ... cactgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
EST: gi|19936808|gb|BQ081021.1|BQ081021
EST:     AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT                         GTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
genomic: AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATATgtaagtcata ... cactgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
EST: gi|298189101|gb|HO037504.1|HO037504
EST:     AAGAGTTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT                         GTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
genomic: AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATATgtaagtcata ... cactgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
EST: gi|192330260|gb|FK020560.1|FK020560
EST:     AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT                         GTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
genomic: AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATATgtaagtcata ... cactgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
EST: gi|6567134|gb|AW234759.1|AW234759
EST:     AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT                         GTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
genomic: AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATATgtaagtcata ... cactgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
EST: gi|151407210|gb|EV277025.1|EV277025
EST:     AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT                         GTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
genomic: AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATATgtaagtcata ... cactgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
EST: gi|298169902|gb|HO018526.1|HO018526
EST:     AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT                         GTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
genomic: AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATATgtaagtcata ... cactgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
EST: gi|298168424|gb|HO009354.1|HO009354
EST:     AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT                         GTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
genomic: AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATATgtaagtcata ... cactgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
EST: gi|254326696|gb|GR832848.1|GR832848
EST:     AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT                         GTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
genomic: AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATATgtaagtcata ... cactgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
EST: gi|58022748|gb|CX709489.1|CX709489
EST:     AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT                         GTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
genomic: AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATATgtaagtcata ... cactgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
EST: gi|26047652|gb|CA784370.1|CA784370
EST:     AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT                         GTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
genomic: AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATATgtaagtcata ... cactgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
EST: gi|208286956|gb|GE082170.1|GE082170
EST:     AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT                         GTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
genomic: AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATATgtaagtcata ... cactgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
EST: gi|298175222|gb|HO018103.1|HO018103
EST:     AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT                         GTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
genomic: AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATATgtaagtcata ... cactgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
EST: gi|17402186|gb|BM178968.1|BM178968
EST:     AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT                         GTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
genomic: AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATATgtaagtcata ... cactgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
EST: gi|192327760|gb|FK022053.1|FK022053
EST:     AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT                         GTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
genomic: AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATATgtaagtcata ... cactgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
EST: gi|298196809|gb|HO041552.1|HO041552
EST:     AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT                         GTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
genomic: AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATATgtaagtcata ... cactgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
EST: gi|19936335|gb|BQ080821.1|BQ080821
EST:     AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT                         GTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
genomic: AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATATgtaagtcata ... cactgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
EST: gi|207750476|gb|GD725577.1|GD725577
EST:     AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT                         GTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
genomic: AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATATgtaagtcata ... cactgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
EST: gi|298192173|gb|HO036255.1|HO036255
EST:     AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT                         GTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
genomic: AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATATgtaagtcata ... cactgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
EST: gi|31459086|gb|CD401114.1|CD401114
EST:     AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT                         GTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
genomic: AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATATgtaagtcata ... cactgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
EST: gi|7233260|gb|AW568608.1|AW568608
EST:     AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT                         GTTGCAAATATGATAAGGTTGTTGGTTGATAGTTATAACAAGCCCGTTCCT
genomic: AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATATgtaagtcata ... cactgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
EST: gi|26047689|gb|CA784402.1|CA784402
EST:     AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT                         GTTGCAAATATGATAAGGTTTTTGGTTGATAGATATAACAAGCCCGTTCCT
genomic: AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATATgtaagtcata ... cactgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
EST: gi|254326697|gb|GR832849.1|GR832849
EST:     AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT                         GTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT
genomic: AAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATATgtaagtcata ... cactgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atccctacatgttttccacaaattgaaagatcttacactttttttcactgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCTGCAATACTTGAAATCCCTTCTAAAGATCATCCTTATGATCCGGCACATG
                             atcttac  putative branch site (score: 3)
                              tcttacactttttttc  CT-rich tract
                   aaattgaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gacttgtgatctttggttatgaccctgctacctcccacccccggtatccctacatgttttccacaaattgaaagatcttacactttttttcactgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCTGCAATACTTGAAATCCCTTCTAAAGATCATCCTTATGATCCGGCACATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
-acttgtg
- - - - - - - ggttatg
- - - - - - - - - - - ccctgct
- - - - - - - - - - - - - - - - - -caccccc
- - - - - - - - - - - - - - - - - - - - - - - -ccctaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccacaaa