1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aaaaaggaacttggttatggttacttgagagtttttattctctcttttgttatcaatcacaaacatttttttatctcctttatgcctgatttacatgtagATATTTCAAAGGTCCTGAGCTTCTTGTTGATCTTCAAGACTATGATTACTCTCTAGATTTATGGAGTCTTGGTTGTATGTTTGCTGGGATG
species | Glycine max |
transcript | GLYMA05G22320.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCAGAGTTCTATCATCCTGGGAAAGAATATAATGTTCGCGTGGCATCAAG ATATTTCAAAGGTCCTGAGCTTCTTGTTGATCTTCAAGACTATGATTACTCEST: gi|15815566|gb|BI787841.1|BI787841
genomic: GCAGAGTTCTATCATCCTGGGAAAGAATATAATGTTCGCGTGGCATCAAGgtatatttgc ... ttacatgtagATATTTCAAAGGTCCTGAGCTTCTTGTTGATCTTCAAGACTATGATTACTC
EST: GCAGAGTTCTATCATCCTGGGAAAGAATATAATGTTCGCGTGGCATCAAG ATATTTCAAAGGTCCTGAGCTTCTTGTTGATCTTCAAGACTATGATTACTCEST: gi|18848708|gb|BM567820.1|BM567820
genomic: GCAGAGTTCTATCATCCTGGGAAAGAATATAATGTTCGCGTGGCATCAAGgtatatttgc ... ttacatgtagATATTTCAAAGGTCCTGAGCTTCTTGTTGATCTTCAAGACTATGATTACTC
EST: GCAGAGTTCTATCATCCTGGGAAAGAATATAATGTTCGCGTGGCATCAAG ATATTTCAAAGGTCCTGAGCTTCTTGTTGATCTTCAAGACTATGATTACTCEST: gi|20814462|gb|BQ298940.1|BQ298940
genomic: GCAGAGTTCTATCATCCTGGGAAAGAATATAATGTTCGCGTGGCATCAAGgtatatttgc ... ttacatgtagATATTTCAAAGGTCCTGAGCTTCTTGTTGATCTTCAAGACTATGATTACTC
EST: GCAGAGTTCTATCATCCTGGGAAAGAATATAATGTTCGCGTGGCATCAAG ATATTTCAAAGGTCCTGAGCTTCTTGTTGATCTTCAAGACTATGATTACTCEST: gi|16343159|gb|BI968754.1|BI968754
genomic: GCAGAGTTCTATCATCCTGGGAAAGAATATAATGTTCGCGTGGCATCAAGgtatatttgc ... ttacatgtagATATTTCAAAGGTCCTGAGCTTCTTGTTGATCTTCAAGACTATGATTACTC
EST: TATCATCCTGNNNAAGAATATAATGTTCGCGTGGCATCAAG ATA-TTCAAAGGTCCTGAGCTTC-TGNNNNNTCTTCAAGACTATGATTACTEST: gi|9819518|gb|BE555031.1|BE555031
genomic: TATCATCCTGGGAAAGAATATAATGTTCGCGTGGCATCAAGgtatatttgc ... ttacatgtagATATTTCAAAGGTCCTGAGCTTCTTG-TTGATCTTCAAGACTATGATTACT
EST: GCAGAGTTCTATCATCCTGGGAAAGAATATAATGTTCGCGTGGCATCAAG ATATTTCAAAGGTCCTGAGCTTCTTGTTGATCTTCAAGACTATGATTACTCEST: gi|7640075|gb|AW734384.1|AW734384
genomic: GCAGAGTTCTATCATCCTGGGAAAGAATATAATGTTCGCGTGGCATCAAGgtatatttgc ... ttacatgtagATATTTCAAAGGTCCTGAGCTTCTTGTTGATCTTCAAGACTATGATTACTC
EST: GCAGAGTTCTATCATCCTGGGAAAGAATATAATGTTCGCGTGGCATCAAG ATATTTCAAAGGTCCTGAGCTTCTTGTTGATCTTCAAGACTATGATTACTC
genomic: GCAGAGTTCTATCATCCTGGGAAAGAATATAATGTTCGCGTGGCATCAAGgtatatttgc ... ttacatgtagATATTTCAAAGGTCCTGAGCTTCTTGTTGATCTTCAAGACTATGATTACTC
tttgttatcaatcacaaacatttttttatctcctttatgcctgatttacatgtagATATTTCAAAGGTCCTGAGCTTCTTGTTGATCTTCAAGACTATGATTACTCTCTAGATTTATGGAGTCTTGGTTGTATGTTTGCTGGGATG
gcctgat putative branch site (score: 4)
acaaacatttttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaaaggaacttggttatggttacttgagagtttttattctctcttttgttatcaatcacaaacatttttttatctcctttatgcctgatttacatgtagATATTTCAAAGGTCCTGAGCTTCTTGTTGATCTTCAAGACTATGATTACTCTCTAGATTTATGGAGTCTTGGTTGTATGTTTGCTGGGATG
-aaaaggaa
- - - - - - ggttatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacaaac