Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttttcttatagctctagttctttaaatgttgatccattgatttaggcaaacaatttccattacctttgacttctgaattcttttttcagGTTATTGACAACGATAGTGGGGCACATATGAGGCCAATGCCAGGGATGATAAGTTTTTCCACTTCTGGACCCAGT

Basic information

species Glycine max
transcript GLYMA05G17350.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G17350.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv13s0019g03980.t01 (Vitis vinifera), 3'ss of exon 3
gttttttcttatagctctagttctttaaatgttgatccattgatttaggcaaacaatttccattacctttgacttctgaattcttttttcagGTTATTGACAACGATAGTGGGGCACATATGAGGCCAATGCCAGGGATGATAAGTTTTTCCACTTCTGGACCCAGT
  || |  | || |||  |    |||   || |||  |  ||||  |        | |   |||    ||    | | ||| |  || |||||| |||||||| |||| |||| |||||||| |||| |||||||||||| |||         |||||| |  ||||
-gttctagtgattgcttcatacatttg--tgatgacac-ctgatacattttctttagtcttattctactt---ctttaaatcccattctcagGTGATTGACAATGATAATGGGTCACATATGCGGCCTATGCCAGGGATGGTAA------TAGCTTCTGCAGTCAGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattgatttaggcaaacaatttccattacctttgacttctgaattcttttttcagGTTATTGACAACGATAGTGGGGCACATATGAGGCCAATGCCAGGGATGATAAGTTTTTCCACTTCTGGACCCAGT
                             ctttgac  putative branch site (score: 4)
                                           ttcttttttc  putative PPT
                                         aattctttttt  TA-rich tract