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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaaactcatgaaaattctgtgtatcttaatgttagcaatttggctgtatgctcagaatttaatttgtatttacttatttaaaagCTAAGCAGATGCCTCTTACTACAAGCAAGCTACGGCGATTGGTGAAGTCAAAACACCCTTATGTTGAACACAATCTTGATACTGTTGTCAGCATCATTAG

Basic information

species Glycine max
transcript GLYMA05G11200.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G11200.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv08s0056g01320.t01 (Vitis vinifera), 3'ss of exon 9
gtatgaaactcatgaaaattctgtgtatcttaatgttagcaatttggctgtatgctcagaatttaatttgtatttactt-----atttaaaagCTAAGCAGATGCCTCTTACTACAAGCAAGCTACGGCGATTGGTGAAGTCAAAACACCCTTATGTTGAACACAATCTTGATACTGTTGTCAGCATCATTAG
   |    ||  ||  | ||       | || || |||    ||| | |  || || |   ||||   |   || ||||     ||| |||||| || ||||||||| | || || |||||| |||| |||||| |||| ||||| |||||||||||||| | |||||||| | ||||||| |||||||| ||
--gtattgcttgtgccagttaatcaatttttcattttacttcttttgtt-catactgaacttttatgctactttcactttttaaattaaaaagCCAAACAGATGCCTGTCACAACCAGCAAGTTACGACGATTGCTGAAATCAAAGCACCCTTATGTTGAGCGCAATCTTGGTCCTGTTGTTAGCATCATAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37996904|gb|CF808493.1|CF808493
EST:     GGATGAGAGTACAGGATATGTATTGCCAAATAAATCTGTTCTTGAAATCG                         CTAAGCAGATGCCTCTTACTACAAGCAAGCTACGGCGATTGGTGAAGTCAA
genomic: GGATGAGAGTACAGGATATGTATTGCCAAATAAATCTGTTCTTGAAATCGgtatgaaact ... tatttaaaagCTAAGCAGATGCCTCTTACTACAAGCAAGCTACGGCGATTGGTGAAGTCAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttagcaatttggctgtatgctcagaatttaatttgtatttacttatttaaaagCTAAGCAGATGCCTCTTACTACAAGCAAGCTACGGCGATTGGTGAAGTCAAAACACCCTTATGTTGAACACAATCTTGATACTGTTGTCAGCATCATTAG
                           atttaat  putative branch site (score: 4)
                                       tttactt  putative PPT
                      tcagaatttaatttgt  TA-rich tract