1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatgtcaactagttttttttctaattgctgtcattaatttattttctcaaattatttcagatgttgttttctaattagtttacataatgcatcttcattttgcagCCTAGGTGGAGTGATCTAGATATCAATCAGCATGTCAACAATGTGAAGTACATTGGCTGGATTCTGGAG
species | Glycine max |
transcript | GLYMA05G08060.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGACTAAACTTGACGACAACACAGCGGATTATATTCGTACCGGTTTAAGT CCTAGGTGGAGTGATCTAGATATCAATCAGCATGTCAACAATGTGAAGTACEST: gi|254345715|gb|GR859362.1|GR859362
genomic: TGACTAAACTTGACGACAACACAGCGGATTATATTCGTACCGGTTTAAGTgtatgtcaac ... cattttgcagCCTAGGTGGAGTGATCTAGATATCAATCAGCATGTCAACAATGTGAAGTAC
EST: TGACTAAACTTGACGACAACACAGCGGATTATATTCGTACCGGTTTAAGT CCTAGGTGGAGTGATCTAGATATCAATCAGCATGTCAACAATGTGAAGTACEST: gi|10846299|gb|BF069222.1|BF069222
genomic: TGACTAAACTTGACGACAACACAGCGGATTATATTCGTACCGGTTTAAGTgtatgtcaac ... cattttgcagCCTAGGTGGAGTGATCTAGATATCAATCAGCATGTCAACAATGTGAAGTAC
EST: TGACTAAACTTGACGACAACACAGCGGATTATATTCGTACCGGTTTAAGT CCTAGGTGGAGTGATCTAGATATCAATCAGCATGTCAACAATGTGAAGTACEST: gi|298177960|gb|HO023809.1|HO023809
genomic: TGACTAAACTTGACGACAACACAGCGGATTATATTCGTACCGGTTTAAGTgtatgtcaac ... cattttgcagCCTAGGTGGAGTGATCTAGATATCAATCAGCATGTCAACAATGTGAAGTAC
EST: TGACTAAACTTGACGACAACACAGCGGATTATATTCGTACCGGTTTAAGT CCTAGGTGGAGTGATCTAGATATCAATCAGCATGTCAACAATGTGAAGTACEST: gi|254340121|gb|GR858246.1|GR858246
genomic: TGACTAAACTTGACGACAACACAGCGGATTATATTCGTACCGGTTTAAGTgtatgtcaac ... cattttgcagCCTAGGTGGAGTGATCTAGATATCAATCAGCATGTCAACAATGTGAAGTAC
EST: TGACTAAACTTGACGACAACACAGCGGATTATATTCGTACCGGTTTAAGT CCTAGGTGGAGTGATCTAGATATCAATCAGCATGTCAACAATGTGAAGTACEST: gi|254325646|gb|GR838527.1|GR838527
genomic: TGACTAAACTTGACGACAACACAGCGGATTATATTCGTACCGGTTTAAGTgtatgtcaac ... cattttgcagCCTAGGTGGAGTGATCTAGATATCAATCAGCATGTCAACAATGTGAAGTAC
EST: CTTGACGACAACACAGCGGATTATATTCGTACCGGTTTAAGT CCTAGGTGGAGTGATCTAGATATCAATCAGCATGTCAACAATGTGAAGTACEST: gi|11274091|gb|BF324459.1|BF324459
genomic: CTTGACGACAACACAGCGGATTATATTCGTACCGGTTTAAGTgtatgtcaac ... cattttgcagCCTAGGTGGAGTGATCTAGATATCAATCAGCATGTCAACAATGTGAAGTAC
EST: TGACTAAACTTGACGACAACACAGCGGATTATATTCGTACCGGTTTAAGT CCTAGGTGGAGTGATCTAGATATCAATCAGCATGTCAACAATGTGAAGTAC
genomic: TGACTAAACTTGACGACAACACAGCGGATTATATTCGTACCGGTTTAAGTgtatgtcaac ... cattttgcagCCTAGGTGGAGTGATCTAGATATCAATCAGCATGTCAACAATGTGAAGTAC
attatttcagatgttgttttctaattagtttacataatgcatcttcattttgcagCCTAGGTGGAGTGATCTAGATATCAATCAGCATGTCAACAATGTGAAGTACATTGGCTGGATTCTGGAG
ttctaat putative branch site (score: 2)
tcttcatttt putative PPT
ttttctaattagttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtcaactagttttttttctaattgctgtcattaatttattttctcaaattatttcagatgttgttttctaattagtttacataatgcatcttcattttgcagCCTAGGTGGAGTGATCTAGATATCAATCAGCATGTCAACAATGTGAAGTACATTGGCTGGATTCTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA