1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...gatgaatgcgaacctcttcagcataattcatgagtgtgggagcccatattcaccaattatttatcttccctttataaccaactatatttttattttgcagGATGTGTAAGGCTCTAATGCCAGGGGATGGAGAAAACATGAGTGATGAGGCTATATGGGAAACTCTTCCT
species | Glycine max |
transcript | GLYMA05G07960.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTTCTTCCCTTACTAACATTTGAAATCATTATTCTCATTGACAATTTCAG GATGTGTAAGGCTCTAATGCCAGGGGATGGAGAAAACATGAGTGATGAGGCEST: gi|192295605|gb|FG988179.1|FG988179
genomic: TTTCTTCCCTTACTAACATTTGAAATCATTATTCTCATTGACAATTTCAGgtaacttctt ... tattttgcagGATGTGTAAGGCTCTAATGCCAGGGGATGGAGAAAACATGAGTGATGAGGC
EST: TTTCTTCCCTTACTAACATTTGAAATCATTATTCTCATTGACAATTTCAG GATGTGTAAGGCTCTAATGCCAGGGGATGGAGAAAACATGAGTGATGAGGC
genomic: TTTCTTCCCTTACTAACATTTGAAATCATTATTCTCATTGACAATTTCAGgtaacttctt ... tattttgcagGATGTGTAAGGCTCTAATGCCAGGGGATGGAGAAAACATGAGTGATGAGGC
atattcaccaattatttatcttccctttataaccaactatatttttattttgcagGATGTGTAAGGCTCTAATGCCAGGGGATGGAGAAAACATGAGTGATGAGGCTATATGGGAAACTCTTCCT
ttataac putative branch site (score: 2)
tttttatttt putative PPT
tttataaccaactata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatgaatgcgaacctcttcagcataattcatgagtgtgggagcccatattcaccaattatttatcttccctttataaccaactatatttttattttgcagGATGTGTAAGGCTCTAATGCCAGGGGATGGAGAAAACATGAGTGATGAGGCTATATGGGAAACTCTTCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- tgaatgc
- - - - - - cctcttc
- - - - - - - - - - - - - ttcatga
- - - - - - - - - - - - - - - - -gtgtggg
- - - - - - - - - - - - - - - - - - - - agcccat
- - - - - - - - - - - - - - - - - - - - - - - - -tcaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaacta