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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctgcagatcctatcattcattcattattctgattagaactaacaacaccaagttaacaatttttcttttgatgacatttttgtttgaatgcagTGACTTTGCCAATATTTTTGATATGAATTGGTTCATTACTTATCTCGCAAAAGACATTACTATTGTTAAAAGAGTTCCTGATAAGGTCATGCGGTCCATG

Basic information

species Glycine max
transcript GLYMA05G04720.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G04720.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv00s0229g00100.t01 (Vitis vinifera), 3'ss of exon 4
gtatctgcagatcctatca-ttcattcat---------tattctgattagaactaacaacaccaagttaacaatttttcttttgatgacatttt--tgtttg-aatgcagTGACTTTGCCAATATTTTTGATATGAATTGGTTCATTACTTATCTCGCAAAAGACATTACTATTGTTAAAAGAGTTCCTGATAAGGTCATGCGGTCCATG
||   |  |||| ||||||  | | ||||         ||   || ||  ||  |  |  |  ||    |  ||  |||| |   |    || |  | |||   |||||||||||||| ||| ||||||||| |  ||||||||||| |||  || ||||| ||| | |||||||||||||||||||| ||||| |||||| | || |||
gtgagttgagattctatcaacttagtcatagtgacatttaacttggttgcaataatgagaattaaccatatgatcattctctcacttgagttctgttatttacgatgcagTGACTTTGTCAACATTTTTGATGTTGATTGGTTCATTTCTTCCCTTGCAAAGGACGTGACTATTGTTAAAAGAGTTCCAGATAAAGTCATGAGATCAATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctaacaacaccaagttaacaatttttcttttgatgacatttttgtttgaatgcagTGACTTTGCCAATATTTTTGATATGAATTGGTTCATTACTTATCTCGCAAAAGACATTACTATTGTTAAAAGAGTTCCTGATAAGGTCATGCGGTCCATG
                                      tttttgttt  CT-rich tract
              ttaacaatttttcttt  TA-rich tract