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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatgtgttgtgctagttgcttttgcgttttcatttgatttctgtatgttgtatgaaattataagatttgttgtgcaattgggattgttgtctagTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTGTATGTTTCTCCACCTCAACCACCGTCTCCTGTCCCAGAAGGTTCTGAGG

Basic information

species Glycine max
transcript GLYMA05G04580.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G04580.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv02s0154g00500.t01 (Vitis vinifera), 3'ss of exon 4
gtatatgtgttgtgctagttgcttttgcgttttcatttgatttctgtatgttgtatgaaattataagatttgttgtgcaattgggattgttgtctagTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTGTATGTTTCTCCACCTCAACCACCGTCTCCTGTCCCAGAAGGTTCTGAGG
                    |   || | || |   |||     | ||   |||   | ||| ||  ||||||||   || ||||    || | ||||| || |||||  | || ||| | |||||||| ||||| |||| |||| | ||||||||||| ||||||||||| || || || || ||||| || || |
--------------------gtaattacattgttggttgtgaggtttagactgtgc-agattgta--atttgttg---aagtggg----ttttgtagTTTAATAAGGATTCGGGTCATATTGTTGAGGAATGCAAGTTGAAAGTGGTTTATGTTTCTCCCCCTCAACCACCATCACCAGTTCCTGAAGGATCAGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298197354|gb|HO044833.1|HO044833
EST:     GCGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATG                         TTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
genomic: GCGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATGgtatatgtgt ... tgttgtctagTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
EST: gi|298187165|gb|HO034314.1|HO034314
EST:     GCGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATG                         TTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCCG
genomic: GCGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATGgtatatgtgt ... tgttgtctagTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
EST: gi|7284923|gb|AW597410.1|AW597410
EST:     CAGTCCGAAGGATATCACTGCAGACATG                         TTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
genomic: CAGTCCGAAGGATATCACTGCAGACATGgtatatgtgt ... tgttgtctagTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
EST: gi|192326599|gb|FK018846.1|FK018846
EST:     GCGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATG                         TTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
genomic: GCGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATGgtatatgtgt ... tgttgtctagTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
EST: gi|298194582|gb|HO043054.1|HO043054
EST:     GCGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATG                         TTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
genomic: GCGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATGgtatatgtgt ... tgttgtctagTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
EST: gi|7588116|gb|AW703919.1|AW703919
EST:     GCGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATG                         TTCAACAAGGAGGCANGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
genomic: GCGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATGgtatatgtgt ... tgttgtctagTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
EST: gi|192320302|gb|FK013392.1|FK013392
EST:     GTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATG                         TTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
genomic: GCGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATGgtatatgtgt ... tgttgtctagTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
EST: gi|33390081|gb|CA853288.1|CA853288
EST:     GCGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATG                         TTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAAT
genomic: GCGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATGgtatatgtgt ... tgttgtctagTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAAT
EST: gi|209700050|gb|BW656218.1|BW656218
EST:     GCGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATG                         TTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
genomic: GCGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATGgtatatgtgt ... tgttgtctagTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
EST: gi|298185938|gb|HO031099.1|HO031099
EST:     GCGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATG                         TTCAACAAGGAGGCAGGGCATGTGGTTGGGGAGTGCAAATTGAGAGTGCTG
genomic: GCGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATGgtatatgtgt ... tgttgtctagTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
EST: gi|192324904|gb|FK015385.1|FK015385
EST:     GCGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATG                         TTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
genomic: GCGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATGgtatatgtgt ... tgttgtctagTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
EST: gi|18041004|gb|BM309298.1|BM309298
EST:     GCGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATG                         TTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
genomic: GCGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATGgtatatgtgt ... tgttgtctagTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
EST: gi|208067432|gb|GD865296.1|GD865296
EST:     GCGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATG                         TTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
genomic: GCGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATGgtatatgtgt ... tgttgtctagTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
EST: gi|10848335|gb|BF070847.1|BF070847
EST:     GCGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATG                         TTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
genomic: GCGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATGgtatatgtgt ... tgttgtctagTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
EST: gi|298189123|gb|HO037526.1|HO037526
EST:     GTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATG                         TTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
genomic: GCGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATGgtatatgtgt ... tgttgtctagTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
EST: gi|10843377|gb|BF067174.1|BF067174
EST:     GCGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATG                         TTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
genomic: GCGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATGgtatatgtgt ... tgttgtctagTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
EST: gi|298169114|gb|HO020474.1|HO020474
EST:     GTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCGGACATG                         TTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
genomic: GCGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATGgtatatgtgt ... tgttgtctagTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgtatgttgtatgaaattataagatttgttgtgcaattgggattgttgtctagTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTGTATGTTTCTCCACCTCAACCACCGTCTCCTGTCCCAGAAGGTTCTGAGG
        ttgtatgaaattataa  TA-rich tract