Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtatttaatttgtgatggaatcatttccccaatttacaaataatttgggggttaagacaacggtgaatttaaatggttttaacagGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAAACAACTAT

Basic information

species Glycine max
transcript GLYMA05G02740.3
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G02740.3 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os12g27520.4 (Oryza sativa), 3'ss of exon 5
gtaagtatttaatttg-tgatgg-aatcat---ttccccaatttacaaataatttgggggttaagacaacggtgaatttaaatggtt--ttaacagGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAAACAACTAT
|||||||  | ||| | | |||| ||| ||    |  ||||   | | |       |  | | | |||  ||||||||| ||||| |  |   ||||| | |||||| ||||||||||||||||| |||||||| |||||||||| ||| |||||||| || ||||  || || || ||| ||| ||||||||| |
gtaagtacatcattagattatggcaattatgaactaaccaaaagagataaccccatgaagcttaaacattggtgaatttgaatggatggtgggcagGTCTGTGAGAAGCTTGGACCAAGCTTATATGATTTTCTGCGGAAAAACAGTTACCGCTCATTCCCAATTGCCCTAGTTCGGGAGGTTGCCAAACAACTGT

upper sequence: GLYMA05G02740.3 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G179308_T01 (Zea mays), 3'ss of exon 5
gtaagtat----ttaatttgtgatgg--aatcatttccccaatttacaaataatttgggggttaagacaacggtgaatttaaatggtt--ttaacagGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAAACAACTAT
|||||||     |||  |||||      |   | |  |||||      ||  || ||| | |||| |||  |||||||||  ||   |  | | ||||| |||||||  ||||||||||||||||| |||||||| ||| |||||| ||| |||||||| || ||||  || || || ||||||| ||||||||| |
gtaagtacattgttagattgtggcaattatgaactgacccaaaaagataaccatgtggtgcttaa-acattggtgaatttggatcaatggtgagcagGTCTTTGAGAGGCTTGGACCAAGCTTATATGATTTTCTGCGGGAAAACAGTTACCGCTCATTCCCAATTGCCCTAGTTCGGGAGATTGCCAAACAACTGT

upper sequence: GLYMA05G02740.3 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G063792_T04 (Zea mays), 3'ss of exon 5
gtaagtatttaatttg-tgatggaatcatttccccaatttacaaata-----atttgggggttaagacaacggtgaatttaaatggtt--ttaacagGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAAACAACTAT
|||||||  |  || | | |||  |    | | |  |   | |||||     || ||| | |||| ||   |||||||||  ||   |  | | ||||| |||||||  ||||||||||||||||| ||||||||  ||||||||||||| |||||||| || ||||  || || || ||| ||| ||||||||| |
gtaagtacattgttagattatgacaattatgcactgacccaaaaatataaccatatggtgcttaa-acgttggtgaatttggattaatggtgagcagGTCTTTGAGAGGCTTGGACCAAGCTTATATGATTTTCTGAGGAAAAACAATTACCGCTCATTCCCAATTGCCCTAGTTCGGGAGTTTGCCAAACAACTGT

upper sequence: GLYMA05G02740.3 (Glycine max), 3'ss of exon 4
lower sequence: AT4G24740.2 (Arabidopsis thaliana), 3'ss of exon 4
gtaagtatttaat-----ttgtgatgga-atcattt-ccccaatttacaaataatttgggggttaagacaacgg-tgaatttaaa-tggttttaacagGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAAACAACTAT
||||||||||| |     ||||||||   || |||| ||||  |||   ||  | |||||| | ||      || |||| ||||| |||||   |||||| |||||||| |||||| | || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||   ||||| |
gtaagtatttagtcaattttgtgatgtctatgattttccccggtttgggaaatagttggggttgaattttgtggatgaacttaaaatggttgctacagGTATTTGAGAAGCTTGGATCGAGTTTATACGATTTTCTTCGGAAAAACAATTATCGCTCCTTTCCCATTGATCTTGTCCGTGAGATTGGCTGGCAACTCT

upper sequence: GLYMA05G02740.3 (Glycine max), 3'ss of exon 4
lower sequence: Vv17s0000g09500.t01 (Vitis vinifera), 3'ss of exon 5
gtaagtat----ttaatttgtgatggaatcatttccccaattt-acaaataatttgggggttaagacaacg---gtgaatttaaatggttttaacagGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAAACAACTAT
||||||||    || | || ||||||  | ||||||||||||| || |||| |||||||||||||||   |    |||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
gtaagtataaaattgaattatgatggcttgatttccccaatttcacgaatattttgggggttaagactttgtggatgaattcaaatggtttcaacagGTGTTTGAGAAGCTTGGACCAAGCTTATACGATTTTCTACGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAGACAACTGT

upper sequence: GLYMA05G02740.3 (Glycine max), 3'ss of exon 4
lower sequence: PP1S100_121V6.1 (Physcomitrella patens), 3'ss of exon 7
-------------gtaagtatttaatttgtgatggaatcatt--tccccaatttacaaataatttgggggttaagacaacggtgaatttaaatggttttaacagGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAAACAACTAT
               | || | |||||  ||    |  | ||  ||      || ||  ||   |   ||| | ||    | | ||  |   |  | ||  ||||| | ||| | ||| ||||| |||||||||||||| ||||| ||||||||||||||  ||||| |    ||||| || || ||  |||||   || || |
ttctagatacagttcaggtgtataatt-atgtccaatcccttgttcttggccttgcatttatagtaatggtcatgat--tgttcaaactgggtaatcttg-cagGTTTGTGAAAGACTAGGACCGAGCTTATACGATTTCCTTCGAAAAAACAATTATCGACCATTTTCTGCAGATCTCGTTCGCGACTTTGGCCGCCAGCTGT

upper sequence: GLYMA05G02740.3 (Glycine max), 3'ss of exon 4
lower sequence: PP1S425_6V6.2 (Physcomitrella patens), 3'ss of exon 5
-----------gtaagtatttaatttgtgatggaatcatttccccaatttacaaataatttgggggttaagacaacggtgaatttaaatggt--tttaacagGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAAACAACTAT
                 ||| | ||  ||  |  |  |  |    ||||      | | ||  ||             ||  |   | ||||  ||   |||||||  ||||  || || ||||| || |||||||||||||| ||||||||||||||  | ||| |    |||||||| || ||  |||||   ||||| |
tatccagggattcgcacattgagttcttg--gatacaacgtttgaaattactccctgaattaaggcgcgtacttcttttgtttactattggtaattatgcagGTGTGCGAGAGGCTGGGGCCAAGTTTGTACGATTTTCTTCGAAAAAACAATTATCGACCGTTTTCTGCAGATCTTGTTCGAGATTTTGGCCGCCAACTCT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151394814|gb|EV264685.1|EV264685
EST:     TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATT                         GTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAAT
genomic: TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTgtaagtattt ... gttttaacagGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAAT
EST: gi|21994008|gb|BQ785536.1|BQ785536
EST:     TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATT                         GTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAAT
genomic: TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTgtaagtattt ... gttttaacagGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttacaaataatttgggggttaagacaacggtgaatttaaatggttttaacagGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAAACAACTAT
                                   aatttaaatggtttta  TA-rich tract