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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtagtatttacttgaactagcttctttttgagctatttcttccatacatttcactttggattatcattaactaataatggcaatacatgttgtagatctaatatactgtcagactctgttgtttttgtctctgtgggttagctttctaatagtatctttttatgaatttgcagTCATGCATGATTTGCGCATGATTCATACTGACCTGAAGCCTGAAAACATACTACTAGTTTCACCCGAGTATGTCAAAGTTCCTGACTACAAG

Basic information

species Glycine max
transcript GLYMA05G02740.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G02740.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv17s0000g09500.t01 (Vitis vinifera), 3'ss of exon 6
gtgtgtagtatttacttgaactagcttctttttgagctatttcttccatacatttcactttggattatcattaactaataatggcaatacatgttgtagatctaatatactgtcagactctgttgtttttgtctctgtgggttagctttctaatagtatctttttatgaatttgcagTCATGCATGATTTGCGCATGATTCATACTGACCTGAAGCCTGAAAACATACTACTAGTTTCACCCGAGTATGTCAAAGTTCCTGACTACAAG
                                                         ||||  | |    ||   || |  | ||| |  || |||  ||| |||| ||  ||   | | ||    | |||     || || | | ||  | ||| ||            |||||||| ||||||||||| ||| | || ||||| ||  |||||||||| || ||||| ||||| || || || ||||| |||||||| |||||||||
---------------------------------------------------------ctttaaact----ttgtttactgcttgcattggattttg--gatttaat-tagggtttcattgtgactctgttgctgaagttgggtggttt--tgataatac-----------tttgcagTTATGCATGATTTACGCCTCATACATACGGATTTGAAGCCTGAGAATATACTTCTAGTGTCTCCAGAATATGTTAAAGTTCCAGACTACAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21994008|gb|BQ785536.1|BQ785536
EST:     CATTGATCTTGTCCGTGAGATTGGCAAACAACTATTGGAATGTATAGCAT                         TCATGCATGATTTGCGCATGATTCATACTGACCTGAAGCCTGAAAACATAC
genomic: CATTGATCTTGTCCGTGAGATTGGCAAACAACTATTGGAATGTATAGCATgtgtgtagta ... gaatttgcagTCATGCATGATTTGCGCATGATTCATACTGACCTGAAGCCTGAAAACATAC
EST: gi|58016463|gb|CX703205.1|CX703205
EST:     ACAACTATTGGAATGTATAGCAT                         TCATGCATGATTTGCGCATGATTCATACTGACCTGAAGCCTGAAAACATAC
genomic: ACAACTATTGGAATGTATAGCATgtgtgtagta ... gaatttgcagTCATGCATGATTTGCGCATGATTCATACTGACCTGAAGCCTGAAAACATAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtttttgtctctgtgggttagctttctaatagtatctttttatgaatttgcagTCATGCATGATTTGCGCATGATTCATACTGACCTGAAGCCTGAAAACATACTACTAGTTTCACCCGAGTATGTCAAAGTTCCTGACTACAAG
                         ttctaat  putative branch site (score: 2)
                        tttctaatagtatctt  TA-rich tract