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...gtcttcctgtgttttgtattttttttaaaaagtttgactattccttgtataaaatatggcttgaatttcatgattatatgcttttgcgacttggtgccagGATGGAACGTGCATTGTTCACCATCTATTTGGCCATGAGGTTGTGGAGAAGATAAAAGAAATGTACTGTGATGCATTCCTTACTGCCCATCTTGAGGTAC
species | Glycine max |
transcript | GLYMA05G02710.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACAGTCAAGACTCTATTAGATCATTACTACCTCGACTTCACTATTTTCAG GATGGAACGTGCATTGTTCACCATCTATTTGGCCATGAGGTTGTGGAGAAGEST: gi|8283359|gb|BE020920.1|BE020920
genomic: ACAGTCAAGACTCTATTAGATCATTACTACCTCGACTTCACTATTTTCAGgtaaaatctt ... ttggtgccagGATGGAACGTGCATTGTTCACCATCTATTTGGCCATGAGGTTGTGGAGAAG
EST: ACAGTCAAGACTCTATTAGATCATTACTACCTCGACTTCACTATTTTCAG GATGGAACGTGCATTGTTCACCATCTATTTGGCCATGAGGTTGTGGAGAAGEST: gi|22524854|gb|BU083665.1|BU083665
genomic: ACAGTCAAGACTCTATTAGATCATTACTACCTCGACTTCACTATTTTCAGgtaaaatctt ... ttggtgccagGATGGAACGTGCATTGTTCACCATCTATTTGGCCATGAGGTTGTGGAGAAG
EST: ACAGTCAAGACTCTATTAGATCATTACTACCTCGACTTCACTATTTTCAG GATGGAACGTGCATTGTTCACCATCTATTTGGCCATGAGGTTGTGGAGAAGEST: gi|23052760|gb|BU577251.1|BU577251
genomic: ACAGTCAAGACTCTATTAGATCATTACTACCTCGACTTCACTATTTTCAGgtaaaatctt ... ttggtgccagGATGGAACGTGCATTGTTCACCATCTATTTGGCCATGAGGTTGTGGAGAAG
EST: ACAGTCAAGACTCTATTAGATCATTACTACCTCGACTTCACTATTTTCAG GATGGAACGTGCATTGTTCACCATCTATTTGGCCATGAGGTTGTGGAGAAG
genomic: ACAGTCAAGACTCTATTAGATCATTACTACCTCGACTTCACTATTTTCAGgtaaaatctt ... ttggtgccagGATGGAACGTGCATTGTTCACCATCTATTTGGCCATGAGGTTGTGGAGAAG
tgtataaaatatggcttgaatttcatgattatatgcttttgcgacttggtgccagGATGGAACGTGCATTGTTCACCATCTATTTGGCCATGAGGTTGTGGAGAAGATAAAAGAAATGTACTGTGATGCATTCCTTACTGCCCATCTTGAGGTAC
aatttcatgattatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcttcctgtgttttgtattttttttaaaaagtttgactattccttgtataaaatatggcttgaatttcatgattatatgcttttgcgacttggtgccagGATGGAACGTGCATTGTTCACCATCTATTTGGCCATGAGGTTGTGGAGAAGATAAAAGAAATGTACTGTGATGCATTCCTTACTGCCCATCTTGAGGTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - -cctgtgt
- - - - - - - - - - - - - - - - - - - - - - - - ataaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tggcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatatgc