1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...acttcatgtaattaaccatctctcctgtggccaatatataatatatcatagatttgagtttaacagtctgtaatataacctcttggggtgttcttgtcagTTCCATTTCGCCACGGAGAGCGCATTGGTTTCAGTTATCTCATATCACAGAAATATACTGGGGATAATGCAGCAATCAAAGTACTGCGGAATTCAGACAT
species | Glycine max |
transcript | GLYMA05G01930.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGATGTCATCCTTAGTTTTGATGGGGTTGATATTGCCAATGATGGAACAG TTCCATTTCGCCACGGAGAGCGCATTGGTTTCAGTTATCTCATATCACAGAEST: gi|51345186|gb|CO985919.1|CO985919
genomic: AGATGTTATCCTTAGTTTTGATGGGGTTGATATTGCCAATGATGGAACAGgtgagtggtt ... ttcttgtcagTTCCATTTCGCCACGGAGAGCGCATTGGTTTCAGTTATCTCATATCACAGA
EST: GTTTTGATGGGGTTGATATTGCCAATGATGGAACAG TTCCATTTCGCCACGGAGAGCGCATTGGTTTCAGTTATCTCATATCACAGAEST: gi|13562731|gb|BG550951.1|BG550951
genomic: GTTTTGATGGGGTTGATATTGCCAATGATGGAACAGgtgagtggtt ... ttcttgtcagTTCCATTTCGCCACGGAGAGCGCATTGGTTTCAGTTATCTCATATCACAGA
EST: AGATGTTATCCTTAGTTTTGATGGGGTTGATATTGCCAATGATGGAACAG TTCCATTTCGCCACGGAGAGCGCATTGGTTTCAGTTATCTCATATCACAGAEST: gi|16996432|gb|BM085804.1|BM085804
genomic: AGATGTTATCCTTAGTTTTGATGGGGTTGATATTGCCAATGATGGAACAGgtgagtggtt ... ttcttgtcagTTCCATTTCGCCACGGAGAGCGCATTGGTTTCAGTTATCTCATATCACAGA
EST: AGATGTTATCCTTAGTTTTGATGGGGTTGATATTGCCAATGATGGAACAG TTCCATTTCGCCACGGAGAGCGCATTGGTTTCAGTTATCTCATATCACAGA
genomic: AGATGTTATCCTTAGTTTTGATGGGGTTGATATTGCCAATGATGGAACAGgtgagtggtt ... ttcttgtcagTTCCATTTCGCCACGGAGAGCGCATTGGTTTCAGTTATCTCATATCACAGA
tcatagatttgagtttaacagtctgtaatataacctcttggggtgttcttgtcagTTCCATTTCGCCACGGAGAGCGCATTGGTTTCAGTTATCTCATATCACAGAAATATACTGGGGATAATGCAGCAATCAAAGTACTGCGGAATTCAGACAT
atataac putative branch site (score: 3)
ttcttgtc putative PPT
tgtaatataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttcatgtaattaaccatctctcctgtggccaatatataatatatcatagatttgagtttaacagtctgtaatataacctcttggggtgttcttgtcagTTCCATTTCGCCACGGAGAGCGCATTGGTTTCAGTTATCTCATATCACAGAAATATACTGGGGATAATGCAGCAATCAAAGTACTGCGGAATTCAGACAT
- - catgtaa
- - - - - - - - - -ctctcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtctgta