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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caaagttctgaatgataaacattctaataatgtctagaaatagctaagtactacctttctcttgggcaaatgaataaattcattgcttggaaatgtgcagATACTGGGCACTGGTATGTCTGCAAAGATGTGGGAAGTAACTGTGGAGCATGCTCGAACTTGTGTACTTGATACAACGAGGCACGTGTACTTCCCTTCTA

Basic information

species Glycine max
transcript GLYMA05G01860.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G01860.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv17s0000g07780.t01 (Vitis vinifera), 3'ss of exon 5
caaagttctgaatgataaacattctaata---atgtctagaaatagctaagtactacctttctcttgggcaaatgaataaatt-cattgcttggaaatgtgcagATACTGGGCACTGGTATGTCTGCAAAGATGTGGGAAGTAACTGTGGAGCATGCTCGAACTTGTGTACTTGATACAACGAGGCACGTGTACTTCCCTTCTA
    ||||||| |  |  |     || |    ||||||  |||    | |    |  |   ||| | ||   |||||  |||  || || |||||  | ||||||| || ||||| ||||||||  | |||||||||||||| |||||||| |||||||| || |||||| ||||||  | ||      ||||||  ||| || 
----gttctgactactttaggcaatagttttcatgtctgcaaaagaatgaaccttttcaccctccttggtctatgaagtaataacaatgtttggatgtttgcagATCCTTGGCACAGGTATGTCAACTAAGATGTGGGAAGTCACTGTGGAACATGCTCGGACGTGTGTAATTGATAAGAGGATTTTTATGTACTGTCCTCCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|105637300|gb|DY577112.1|DY577112
EST:     TTAGAGAGTTTCTCACACTTCTCAATCTGGATCCAGCAAAGCTGCGCAGT                         ATACTGGGCACTGGTATGTCTGCAAAGATGTGGGAAGTAACTGTGGAGCAT
genomic: TTAGAGAGTTTCTCACACTTCTCAATCTGGATCCAGCAAAGCTGCGCAGTgtaataattt ... aaatgtgcagATACTGGGCACTGGTATGTCTGCAAAGATGTGGGAAGTAACTGTGGAGCAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagtactacctttctcttgggcaaatgaataaattcattgcttggaaatgtgcagATACTGGGCACTGGTATGTCTGCAAAGATGTGGGAAGTAACTGTGGAGCATGCTCGAACTTGTGTACTTGATACAACGAGGCACGTGTACTTCCCTTCTA
                      aaatgaataaattcat  TA-rich tract