1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgatatacacattagtgacaagagatgatgagaaattgatttgtggttgattcttgtccatctgttcccctaatattactcctattgatgtcatcaatagGTCTATCCCTGTCCTAAGGGTTCTGTAAGACACAGAGAGGTGGTCAGAAGAACTGGTGGCAAAGAACA
species | Glycine max |
transcript | GLYMA04G43520.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTTGTAGAAGGGTCCGGGAAGCTTTGACTGAACTAGATCTTTCTGTAGAG GTCTATCCCTGTCCTAAGGGTTCTGTAAGACACAGAGAGGTGGTCAGAAGAEST: gi|10231867|gb|BE800755.1|BE800755
genomic: TTTGTAGAAGGGTCCGGGAAGCTTTGACTGAACTAGATCTTTCTGTAGAGgttagctgtc ... tcatcaatagGTCTATCCCTGTCCTAAGGGTTCTGTAAGACACAGAGAGGTGGTCAGAAGA
EST: TTTGTAGAAGGGTCCGGGAAGCTTTGACTGAACTAGATCTTTTTGTAGAG GTCTATCCCTGTCCTAAGGGTTCTGTAAGACACAGAGAGGTGGTCAGAAGAEST: gi|298192682|gb|HO033116.1|HO033116
genomic: TTTGTAGAAGGGTCCGGGAAGCTTTGACTGAACTAGATCTTTCTGTAGAGgttagctgtc ... tcatcaatagGTCTATCCCTGTCCTAAGGGTTCTGTAAGACACAGAGAGGTGGTCAGAAGA
EST: TTTGTAGAAGGGTCCGGGAAGCTTTGACTGAACTAGATCTTTCTGTAGAG GTCTATCCCTGTCCTAAGGGTTCTGTAAGACACAGAGAGGTGGTCAGAAGAEST: gi|9903056|gb|BE612024.1|BE612024
genomic: TTTGTAGAAGGGTCCGGGAAGCTTTGACTGAACTAGATCTTTCTGTAGAGgttagctgtc ... tcatcaatagGTCTATCCCTGTCCTAAGGGTTCTGTAAGACACAGAGAGGTGGTCAGAAGA
EST: TTTGTAGAAGGGTCCGGGAAGCTTTGACTGAACTAGATCTTTCTGTAGAG GTCTATCCCTGTCCTAAGGGTTCTGTAAGACACAGAGAGGTGGTCAGAAAA
genomic: TTTGTAGAAGGGTCCGGGAAGCTTTGACTGAACTAGATCTTTCTGTAGAGgttagctgtc ... tcatcaatagGTCTATCCCTGTCCTAAGGGTTCTGTAAGACACAGAGAGGTGGTCAG-AAG
gttgattcttgtccatctgttcccctaatattactcctattgatgtcatcaatagGTCTATCCCTGTCCTAAGGGTTCTGTAAGACACAGAGAGGTGGTCAGAAGAACTGGTGGCAAAGAACA
tattgat putative branch site (score: 3)
taatattact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatatacacattagtgacaagagatgatgagaaattgatttgtggttgattcttgtccatctgttcccctaatattactcctattgatgtcatcaatagGTCTATCCCTGTCCTAAGGGTTCTGTAAGACACAGAGAGGTGGTCAGAAGAACTGGTGGCAAAGAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - atacaca
- - - - - - - -tgacaag
- - - - - - - - - - - -gatgatg
- - - - - - - - - - - - - - - - - - - - - gtggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctattg