1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atataatcaatcattttcttaggatgtaattatgcattaagacaaacaaaatgagacggaagaatgaattaatcagatcagaatcatgttttttgtgcagGTTGCAGTTGCCGTCCTTGTTTCTTGGCTGATATTTAGGAACCCAATTTCGTATTTAAATTCTGTTGGATGTACCGTGACTCTTGTGGGATGTACATTCT
species | Glycine max |
transcript | GLYMA04G42900.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGATTCACTCCACCACTGCTGTAACATTTAATGTTGCCGGAAATCTTAAG GTTGCAGTTGCCGTCCTTGTTTCTTGGCTGATATTTAGGAACCCAATTTCGEST: gi|20814095|gb|BQ298573.1|BQ298573
genomic: TGATTCACTCCACCACTGCTGTAACATTTAATGTTGCCGGAAATCTTAAGgtaagaacta ... ttttgtgcagGTTGCAGTTGCCGTCCTTGTTTCTTGGCTGATATTTAGGAACCCAATTTCG
EST: TGATTCACTCCACCACTGCTGTAACATTTAATGTTGCCGGAAATCTTAAG GTTGCAGTTGCCGTCCTTGTTTCTTGGCTGATATTTAGGAACCCAATTTCGEST: gi|31458643|gb|CD400671.1|CD400671
genomic: TGATTCACTCCACCACTGCTGTAACATTTAATGTTGCCGGAAATCTTAAGgtaagaacta ... ttttgtgcagGTTGCAGTTGCCGTCCTTGTTTCTTGGCTGATATTTAGGAACCCAATTTCG
EST: GGAAATCTTAAG GTTCCAGTTGCCGTCCTTGTTTCTTGGCTGATATTTAGGAACCCAATTTCGEST: gi|11412054|gb|BF424065.1|BF424065
genomic: GGAAATCTTAAGgtaagaacta ... ttttgtgcagGTTGCAGTTGCCGTCCTTGTTTCTTGGCTGATATTTAGGAACCCAATTTCG
EST: CTGCTGTAACATTTAATGTTGCCGGAAATCTTAAG GTTGCAGTTGCCGTCCTTGTTTCTTGGCTGATATTTAGGAACCCAATTTCGEST: gi|31307609|gb|CD392812.1|CD392812
genomic: CTGCTGTAACATTTAATGTTGCCGGAAATCTTAAGgtaagaacta ... ttttgtgcagGTTGCAGTTGCCGTCCTTGTTTCTTGGCTGATATTTAGGAACCCAATTTCG
EST: TGATTCACTCCACCACTGCTGTAACATTTAATGTTGCCGGAAATCTTAAG GTTGCAGTTGCCGTCCTTGTTTCTTGGCTGATATTTAGGAACCCAATTTCG
genomic: TGATTCACTCCACCACTGCTGTAACATTTAATGTTGCCGGAAATCTTAAGgtaagaacta ... ttttgtgcagGTTGCAGTTGCCGTCCTTGTTTCTTGGCTGATATTTAGGAACCCAATTTCG
acaaaatgagacggaagaatgaattaatcagatcagaatcatgttttttgtgcagGTTGCAGTTGCCGTCCTTGTTTCTTGGCTGATATTTAGGAACCCAATTTCGTATTTAAATTCTGTTGGATGTACCGTGACTCTTGTGGGATGTACATTCT
aattaat putative branch site (score: 3)
tgtttttt putative PPT
aagaatgaattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atataatcaatcattttcttaggatgtaattatgcattaagacaaacaaaatgagacggaagaatgaattaatcagatcagaatcatgttttttgtgcagGTTGCAGTTGCCGTCCTTGTTTCTTGGCTGATATTTAGGAACCCAATTTCGTATTTAAATTCTGTTGGATGTACCGTGACTCTTGTGGGATGTACATTCT
- - - - - - - - - - - - - - - - tgcatta
- - - - - - - - - - - - - - - - - - - - - -aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgtt