1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttagatgtttaagcttattccaagttccatttttttaaacttcctattcataacttgttatttttggtggcttattagtctttttgtttatttgctgcagCACCCCAACCGAAGTAAAGGAAAGGATACTGAAAGGAAGAATGGACTAACTTTTAAGCGTGTTTGTTTTGACGTACTCCTACTTTCCGAGGAGCCTGAAC
species | Glycine max |
transcript | GLYMA04G42830.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCTGTAGATCGTGATTGTTTAAGTGGCTGGGGTGGACATGTTTATGTTGT CACCCCAACCGAAGTAAAGGAAAGGATACTGAAAGGAAGAATGGACTAACTEST: gi|214005797|gb|DB985945.1|DB985945
genomic: TCTGTAGATCGTGATTGTTTAAGTGGCTGGGGTGGACATGTTTATGTTGTgtaagcttat ... tttgctgcagCACCCCAACCGAAGTAAAGGAAAGGATACTGAAAGGAAGAATGGACTAACT
EST: TCTGTAGATCGTGATTGTTTAAGTGGCTGGGGTGGACATGTTTATGTTGT CACCCCAACCGAAGTAAAGGAAAGGATACTGAAAGGAAGAATGGACTAACTEST: gi|193694360|gb|FK629504.1|FK629504
genomic: TCTGTAGATCGTGATTGTTTAAGTGGCTGGGGTGGACATGTTTATGTTGTgtaagcttat ... tttgctgcagCACCCCAACCGAAGTAAAGGAAAGGATACTGAAAGGAAGAATGGACTAACT
EST: TCTGTAGATCGTGATTGTTTAAGTGGCTGGGGTGGACATGTTTATGTTGT CACCCCAACCGAAGTAAAGGAAAGGATACTGAAAGGAAGAATGGACTAACTEST: gi|192322314|gb|FK014555.1|FK014555
genomic: TCTGTAGATCGTGATTGTTTAAGTGGCTGGGGTGGACATGTTTATGTTGTgtaagcttat ... tttgctgcagCACCCCAACCGAAGTAAAGGAAAGGATACTGAAAGGAAGAATGGACTAACT
EST: TCTGTAGATCGTGATTGTTTAAGTGGCTGGGGTGGACATGTTTATGTTGT CACCCCAACCGAAGTAAAGGAAAGGATACTGAAAGGAAGAATGGACTAACTEST: gi|192325513|gb|FK018424.1|FK018424
genomic: TCTGTAGATCGTGATTGTTTAAGTGGCTGGGGTGGACATGTTTATGTTGTgtaagcttat ... tttgctgcagCACCCCAACCGAAGTAAAGGAAAGGATACTGAAAGGAAGAATGGACTAACT
EST: TCTGTAGATCGTGATTGTTTAAGTGGCTGGGGTGGACATGTTTATGTTGT CACCCCAACCGAAGTAAAGGAAAAGATACTGAAAAGGAAGAATGGACTAACEST: gi|151409085|gb|EV278893.1|EV278893
genomic: TCTGTAGATCGTGATTGTTTAAGTGGCTGGGGTGGACATGTTTATGTTGTgtaagcttat ... tttgctgcagCACCCCAACCGAAGTAAAGGAAAGGATACTGAAA-GGAAGAATGGACTAAC
EST: CTGTAGATCGTGATTGTTTAAGTGGCTGGGGTGGACATGTTTATGTTTGT CACCCCAACCGAAGTAAAGGAAAGGATACTGAAAGGAAGAATGGACTAACEST: gi|17963651|gb|BM270398.1|BM270398
genomic: CTGTAGATCGTGATTGTTTAAGTGGCTGGGGTGGACATGTTTATGTT-GTgtaagcttat ... tttgctgcagCACCCCAACCGAAGTAAAGGAAAGGATACTGAAAGGAAGAATGGACTAAC
EST: TCTGTAGATCGTGATTGTTTAAGTGGCTGGGGTGGACATGTTTATGTTGT CACCCCAACCGAAGTAAAGGAAAGGATACTGAAAGGAAGAATGGACTAACTEST: gi|8283379|gb|BE020940.1|BE020940
genomic: TCTGTAGATCGTGATTGTTTAAGTGGCTGGGGTGGACATGTTTATGTTGTgtaagcttat ... tttgctgcagCACCCCAACCGAAGTAAAGGAAAGGATACTGAAAGGAAGAATGGACTAACT
EST: TCTGTAGATCGTGATTGGTTAAGTGGCTGGGGTGGACATGGTTATGTTGT CACCCCAACCGAAGTAAAGGAAAGGATACTGAAAGGAAGAATGGACTAACTEST: gi|6567370|gb|AW234981.1|AW234981
genomic: TCTGTAGATCGTGATTGTTTAAGTGGCTGGGGTGGACATGTTTATGTTGTgtaagcttat ... tttgctgcagCACCCCAACCGAAGTAAAGGAAAGGATACTGAAAGGAAGAATGGACTAACT
EST: TCTGTAGATCGTGATTGTTTAAGTGGCTGGGGTGGACATGTTTATGTTGT CACCCCAACCGAAGTAAAGGAAAGGATACTGAAAGGAAGAATGGACTAACTEST: gi|151397166|gb|EV267039.1|EV267039
genomic: TCTGTAGATCGTGATTGTTTAAGTGGCTGGGGTGGACATGTTTATGTTGTgtaagcttat ... tttgctgcagCACCCCAACCGAAGTAAAGGAAAGGATACTGAAAGGAAGAATGGACTAACT
EST: TCTGTAGATCGTGATTGTTTAAGTGGCTGGGGTGGACATGTTTATGTTGT CACCCCAACCGAAGTAAAGGAAAGGATACTGAAAGGAAGAATGGACTAACTEST: gi|151411912|gb|EV281723.1|EV281723
genomic: TCTGTAGATCGTGATTGTTTAAGTGGCTGGGGTGGACATGTTTATGTTGTgtaagcttat ... tttgctgcagCACCCCAACCGAAGTAAAGGAAAGGATACTGAAAGGAAGAATGGACTAACT
EST: TCTGTAGATCGTGATTGTTTAAGTGGCTGGGGTGGACATGTTTATGTTGT CACCCCAACCGAAGTAAAGGAAAGGATACTGAAAGGAAGAATGGACTAACTEST: gi|16343936|gb|BI969531.1|BI969531
genomic: TCTGTAGATCGTGATTGTTTAAGTGGCTGGGGTGGACATGTTTATGTTGTgtaagcttat ... tttgctgcagCACCCCAACCGAAGTAAAGGAAAGGATACTGAAAGGAAGAATGGACTAACT
EST: TCTGTAGATCGTGATTGTTTAAGTGGCTGGGGTGGACATGTTTATGTTGT CACCCCAACCGAAGTAAAGGAAAGGATACTGAAAGGAAGAATGGACTAACT
genomic: TCTGTAGATCGTGATTGTTTAAGTGGCTGGGGTGGACATGTTTATGTTGTgtaagcttat ... tttgctgcagCACCCCAACCGAAGTAAAGGAAAGGATACTGAAAGGAAGAATGGACTAACT
attcataacttgttatttttggtggcttattagtctttttgtttatttgctgcagCACCCCAACCGAAGTAAAGGAAAGGATACTGAAAGGAAGAATGGACTAACTTTTAAGCGTGTTTGTTTTGACGTACTCCTACTTTCCGAGGAGCCTGAAC
tcataac putative branch site (score: 2)
tctttttgtttattt putative PPT
ttattagtctttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttagatgtttaagcttattccaagttccatttttttaaacttcctattcataacttgttatttttggtggcttattagtctttttgtttatttgctgcagCACCCCAACCGAAGTAAAGGAAAGGATACTGAAAGGAAGAATGGACTAACTTTTAAGCGTGTTTGTTTTGACGTACTCCTACTTTCCGAGGAGCCTGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - -ttccaag
- - - - - - - - - - - - - - - - - - - -cttccta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttggtgg