1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatagctatttatcctcttctaaatagtttcactgtttcacaacatcaagtctgaacagctagaaagtatacaaagaagctataagaactaacagaaaataatctaatgttgtcttaattgcagGTCTTCAGTGGAAGAGACACTACAATGATTTGAAGAAGATAGCTGAATCTTTCCGGGTTGTATAACTAAAATCTTCTGTGAACCCAGAGCTAATTGAAAT
species | Glycine max |
transcript | GLYMA04G42010.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGCCACTGCAGCTGGCAACCGCTTATATTTGTTTGGAGTAACAGGCAGCG GTCTTCAGTGGAAGAGACACTACAATGATTTGAAGAAGATAGCTGAATCTTEST: gi|15285767|gb|BI469658.1|BI469658
genomic: TGCCACTGCAGCTGGCAACCGCTTATATTTGTTTGGAGTAACAGGCAGCGgtatagctat ... ttaattgcagGTCTTCAGTGGAAGAGACACTACAATGATTTGAAGAAGATAGCTGAATCTT
EST: TGCCACTGCAGCTGGCAACCGCTTATATTTGTTTGGAGTAACAGGCAGCG GTCTTCAGTGGAAGAGACACTACAATGATTTGAAGAAGATAGCTGAATCTTEST: gi|5509839|gb|AI856397.1|AI856397
genomic: TGCCACTGCAGCTGGCAACCGCTTATATTTGTTTGGAGTAACAGGCAGCGgtatagctat ... ttaattgcagGTCTTCAGTGGAAGAGACACTACAATGATTTGAAGAAGATAGCTGAATCTT
EST: TGCCACTGCAGCTGGCAACCGCTTATATTTGTTTGGAGTAACAGGCAGCG GTCTTCAGTGGAAGAGACACTACAATGATTTGAAGAAGATAGCTGAATCTTEST: gi|209716367|gb|BW657487.1|BW657487
genomic: TGCCACTGCAGCTGGCAACCGCTTATATTTGTTTGGAGTAACAGGCAGCGgtatagctat ... ttaattgcagGTCTTCAGTGGAAGAGACACTACAATGATTTGAAGAAGATAGCTGAATCTT
EST: TGCCACTGCAGCTGGCAACCGCTTATATTTGTTTGGAGTAACAGGCAGCG GTCTTCAGTGGAAGAGACACTACAATGATTTGAAGAAGATAGCTGAATCTTEST: gi|192314016|gb|FK011108.1|FK011108
genomic: TGCCACTGCAGCTGGCAACCGCTTATATTTGTTTGGAGTAACAGGCAGCGgtatagctat ... ttaattgcagGTCTTCAGTGGAAGAGACACTACAATGATTTGAAGAAGATAGCTGAATCTT
EST: TGCCACTGCAGCTGGCAACCGCTTATATTTGTTTGGAGTAACAGGCAGCG GTTTTCAGTGGAAGAGACACTACAATGATTTGAAGAAGATAGCTGAATCTTEST: gi|31469528|gb|CD411556.1|CD411556
genomic: TGCCACTGCAGCTGGCAACCGCTTATATTTGTTTGGAGTAACAGGCAGCGgtatagctat ... ttaattgcagGTCTTCAGTGGAAGAGACACTACAATGATTTGAAGAAGATAGCTGAATCTT
EST: TGCCACTGCAGCTGGCAACCGCTTATATTTGTTTGGAGTAACAGGCAGCG GTCTTCAGTGGAAGAGACACTACAATGATTTGAAGAAGATAGCTGAATCTTEST: gi|31561437|gb|CD487275.1|CD487275
genomic: TGCCACTGCAGCTGGCAACCGCTTATATTTGTTTGGAGTAACAGGCAGCGgtatagctat ... ttaattgcagGTCTTCAGTGGAAGAGACACTACAATGATTTGAAGAAGATAGCTGAATCTT
EST: TGCCACTGCAGCTGGCAACCGCTTATATTTGTTTGGAGTAACAGGCAGCG GTCTTCAGTGGAAGAGACACTACAATGATTTGAAGAAGATAGCTGAATCTTEST: gi|213604484|gb|DB983516.1|DB983516
genomic: TGCCACTGCAGCTGGCAACCGCTTATATTTGTTTGGAGTAACAGGCAGCGgtatagctat ... ttaattgcagGTCTTCAGTGGAAGAGACACTACAATGATTTGAAGAAGATAGCTGAATCTT
EST: TGCCACTGCAGCTGGCAACCGCTTATATTTGTTTGGAGTAACAGGCAGCG GTCTTCAGTGGAAGAGACACTACAATGATTTGAAGAAGATAGCTGAATCTTEST: gi|105633575|gb|DW246938.1|DW246938
genomic: TGCCACTGCAGCTGGCAACCGCTTATATTTGTTTGGAGTAACAGGCAGCGgtatagctat ... ttaattgcagGTCTTCAGTGGAAGAGACACTACAATGATTTGAAGAAGATAGCTGAATCTT
EST: TGCCACTGCAGCTGGCAACCGCTTATATTTGTTTGGAGTAACAGGCAGCG GTCTTCAGTGGAAGAGACACTACAATGATTTGAAGAAGATAGCTGAATCTT
genomic: TGCCACTGCAGCTGGCAACCGCTTATATTTGTTTGGAGTAACAGGCAGCGgtatagctat ... ttaattgcagGTCTTCAGTGGAAGAGACACTACAATGATTTGAAGAAGATAGCTGAATCTT
tacaaagaagctataagaactaacagaaaataatctaatgttgtcttaattgcagGTCTTCAGTGGAAGAGACACTACAATGATTTGAAGAAGATAGCTGAATCTTTCCGGGTTGTATAACTAAAATCTTCTGTGAACCCAGAGCTAATTGAAAT
ttgtctt CT-rich tract
aaaataatctaatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatagctatttatcctcttctaaatagtttcactgtttcacaacatcaagtctgaacagctagaaagtatacaaagaagctataagaactaacagaaaataatctaatgttgtcttaattgcagGTCTTCAGTGGAAGAGACACTACAATGATTTGAAGAAGATAGCTGAATCTTTCCGGGTTGTATAACTAAAATCTTCTGTGAACCCAGAGCTAATTGAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT