1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aaaagtactttttggacgattaaccaaacatgtcctgagtttaattaaaaaggaaaaaaaatgtttaaattgatggacttttgacttggatttcgtgcagCCTGGGGGTGATCCACTAGTACTTTGTTTTGTCGATTTTTTGAGTCCTGCTCATGCAGCAACTGCCATGGAAGCATTGCAGG
species | Glycine max |
transcript | GLYMA04G41150.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTTTTGTTGGCTACAAAGAAGTCAGACTTGTTAGCAAGGAATCGAGACAA CCTGGGGGTGATCCACTAGTACTTTGTTTTGTCGATTTTTTGAGTCCTGCTEST: gi|58019080|gb|CX705822.1|CX705822
genomic: CTTTTGTTGGCTACAAAGAAGTCAGACTTGTTAGCAAGGAATCGAGACAAgtaagtgtat ... tttcgtgcagCCTGGGGGTGATCCACTAGTACTTTGTTTTGTCGATTTTTTGAGTCCTGCT
EST: CTTTTGTTGGCTACAAAGAAGTCAGACTTGTTAGCAAGGAATCGAGACAA CCTGGGGGTGATCCACTAGTACTTTGTTTTGTCGATTTTTTGAGTCCTGCT
genomic: CTTTTGTTGGCTACAAAGAAGTCAGACTTGTTAGCAAGGAATCGAGACAAgtaagtgtat ... tttcgtgcagCCTGGGGGTGATCCACTAGTACTTTGTTTTGTCGATTTTTTGAGTCCTGCT
taaaaaggaaaaaaaatgtttaaattgatggacttttgacttggatttcgtgcagCCTGGGGGTGATCCACTAGTACTTTGTTTTGTCGATTTTTTGAGTCCTGCTCATGCAGCAACTGCCATGGAAGCATTGCAGG
ttttgac putative branch site (score: 3)
aaaaaaaatgtttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaagtactttttggacgattaaccaaacatgtcctgagtttaattaaaaaggaaaaaaaatgtttaaattgatggacttttgacttggatttcgtgcagCCTGGGGGTGATCCACTAGTACTTTGTTTTGTCGATTTTTTGAGTCCTGCTCATGCAGCAACTGCCATGGAAGCATTGCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG