1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gtccctttgtgaactcaagatttatattatgatgcaaaggacatttcaaccttatgttaccctaacgttttgcattttatttcaatttcttgttactcagTTTAACATGAAATGCTGAGGATGCAAATGTGCTTGTTTGTGCATTCAGGAGAGTATGGGGAGCTATAGTGCTTTACCCTTTTTTCCAGCAGATATTCTCG
species | Glycine max |
transcript | GLYMA04G41070.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATGGCGGGGCTCTAGCCATGGCAAGAGCTTCTTTAAAGGCTTAGGCAATG TTTAACATGAAATGCTGAGGATGCAAATGTGCTTGTTTGTGCATTCAGGAG
genomic: ATGGCGGGGCTCTAGCCATGGCAAGAGCTTCTTTAAAGGCTTAGGCAATGgtaggtttaa ... tgttactcagTTTAACATGAAATGCTGAGGATGCAAATGTGCTTGTTTGTGCATTCAGGAG
tcaaccttatgttaccctaacgttttgcattttatttcaatttcttgttactcagTTTAACATGAAATGCTGAGGATGCAAATGTGCTTGTTTGTGCATTCAGGAGAGTATGGGGAGCTATAGTGCTTTACCCTTTTTTCCAGCAGATATTCTCG
ccctaac putative branch site (score: 2)
tttcttgtt putative PPT
attttatttcaatttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtccctttgtgaactcaagatttatattatgatgcaaaggacatttcaaccttatgttaccctaacgttttgcattttatttcaatttcttgttactcagTTTAACATGAAATGCTGAGGATGCAAATGTGCTTGTTTGTGCATTCAGGAGAGTATGGGGAGCTATAGTGCTTTACCCTTTTTTCCAGCAGATATTCTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- ccctttg
- - - - - - - - - - - - - - -tgatgca
- - - - - - - - - - - - - - - - - - - - - - - - -ccttatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttttgca