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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttcctttgtctttattcaactagcaatagtctctgaaccctgaaataattgtctatctttactgactaaagtgtttcaatttggcagATTTTATTTTGATTTCAGCATGACTTATGTGGGAGCAGGAATGATTTGTTCCCATCTTGTAAATTTATCCTTGCTTCTTGGTGCTGTGATTTCATGGGGC

Basic information

species Glycine max
transcript GLYMA04G41020.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26045712|gb|CA783212.1|CA783212
EST:     TGTGGATTTGTTAAGTTTCCCACTTTTGGATTGAAAGCATGGAAAAATTC                         ATTTTATTTTGATTTCAGCATGACTTATGTGGGAGCAGGAATGATTTGTTC
genomic: TGTGGATTTGTTAAGTTTCCCACTTTTGGATTGAAAGCATGGAAAAATTCgtatgttcct ... aatttggcagATTTTATTTTGATTTCAGCATGACTTATGTGGGAGCAGGAATGATTTGTTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgaaccctgaaataattgtctatctttactgactaaagtgtttcaatttggcagATTTTATTTTGATTTCAGCATGACTTATGTGGGAGCAGGAATGATTTGTTCCCATCTTGTAAATTTATCCTTGCTTCTTGGTGCTGTGATTTCATGGGGC
          aaataattgtctat  TA-rich tract