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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcatatagggaaacaatttagtgtacattatatacaaggaaagattaaactacatccaccatccaaacaacttttatttgaattttgttgttctctacagAACTACAATAATGCATATGGTGGACAGCAGCTTCCACTCCGTTGGTTGCCAGCATATTGCCAACCCTTTTATGGCCTTGGTAGACAGTTTATTCCAACAG

Basic information

species Glycine max
transcript GLYMA04G40770.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151397932|gb|EV267805.1|EV267805
EST:     GTATCCCGGTTATCCTCACCCACAAGACTTGTATGAAATG                         AACTACAATAATGCATATGGTGGACAGCAGCTTCCACTCCGTTGGTTGCCA
genomic: GTATCCTGGTTATCCTCACCCACAAGACTTGTATGAAATGgttagtttgc ... ttctctacagAACTACAATAATGCATATGGTGGACAGCAGCTTCCACTCCGTTGGTTGCCA
EST: gi|10231305|gb|BE800193.1|BE800193
EST:     CAAGACTTGTATGAAATG                         AACTACAATAATGCATATGGTGGACAGCAGCTTCCACTCCGTTGGTTGCCA
genomic: CAAGACTTGTATGAAATGgttagtttgc ... ttctctacagAACTACAATAATGCATATGGTGGACAGCAGCTTCCACTCCGTTGGTTGCCA
EST: gi|23733409|gb|BU764904.1|BU764904
EST:     GTTATCCTCACCCACAAGACTTGTATGAAATG                         AACTACAATAATGCATATGGTGGACAGCAGCTTCCACTCCGTTGGTTGCCA
genomic: GTTATCCTCACCCACAAGACTTGTATGAAATGgttagtttgc ... ttctctacagAACTACAATAATGCATATGGTGGACAGCAGCTTCCACTCCGTTGGTTGCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaactacatccaccatccaaacaacttttatttgaattttgttgttctctacagAACTACAATAATGCATATGGTGGACAGCAGCTTCCACTCCGTTGGTTGCCAGCATATTGCCAACCCTTTTATGGCCTTGGTAGACAGTTTATTCCAACAG
                                     ttttgttgttctct  CT-rich tract
                   aaacaacttttatttg  TA-rich tract