1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttctcagtctgtggtaatagaaggatgaatagtaaacttaattgttgttttttttccctataaattttgtttagttcatggtgcttgaaaatacttgcagATTATTGAAGGACAGGCAGCTGTGCACAGATGTAATGCTTATGTTGATTTCAAAGAAGAGTACTTCACCCCATATCCTGCTGTTGTCAATGACAATAATC
species | Glycine max |
transcript | GLYMA04G40440.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATTTCAGACAGCGATTAAAGGAG ATTATTGAAGGACAGGCAGCTGTGCACAGATGTAATGCTTATGTTGATTTCEST: gi|22928390|gb|BU545529.1|BU545529
genomic: ATTTCAGACAGCGATTAAAGGAGgtacacatga ... atacttgcagATTATTGAAGGACAGGCAGCTGTGCACAGATGTAATGCTTATGTTGATTTC
EST: GGAGCCTGACAAATGAAGGCATGTACCATTTCAGACAGCGATTAAAGGAG ATTATTGAAGGACAGGCAGCTGTGCACAGATGTAATGCTTATGTTGATTTC
genomic: GGAGCCTGACAAATGAAGGCATGTACCATTTCAGACAGCGATTAAAGGAGgtacacatga ... atacttgcagATTATTGAAGGACAGGCAGCTGTGCACAGATGTAATGCTTATGTTGATTTC
tgttttttttccctataaattttgtttagttcatggtgcttgaaaatacttgcagATTATTGAAGGACAGGCAGCTGTGCACAGATGTAATGCTTATGTTGATTTCAAAGAAGAGTACTTCACCCCATATCCTGCTGTTGTCAATGACAATAATC
tataaattttgtttag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctcagtctgtggtaatagaaggatgaatagtaaacttaattgttgttttttttccctataaattttgtttagttcatggtgcttgaaaatacttgcagATTATTGAAGGACAGGCAGCTGTGCACAGATGTAATGCTTATGTTGATTTCAAAGAAGAGTACTTCACCCCATATCCTGCTGTTGTCAATGACAATAATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - -tctgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtgct