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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatacactgtcttttattaaatcaatactggaattggatgttttaagtttctgattaatgtttgtcttctgaaattagGGCAATCAGGATCATCTTGAAAGTGGGGAAAAAG

Basic information

species Glycine max
transcript GLYMA04G40300.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192297793|gb|FG988305.1|FG988305
EST:     GTCTCAGTTGGGAGGATTCAAAGAAATTTCATGTTTCTTTGTATGGGAAG                         GGCAATCAGAATCATCTTGAAAGTGGGGAAAAAG
genomic: GTCTCAGTTGG-AGGATTCAAAGAAATTTCATGTTTCTTTGTATGGGAAGgtgatacact ... ctgaaattagGGCAATCAGGATCATCTTGAAAGTGGGGAAAAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatactggaattggatgttttaagtttctgattaatgtttgtcttctgaaattagGGCAATCAGGATCATCTTGAAAGTGGGGAAAAAG
                             gattaat  putative branch site (score: 3)
                                     tttgtcttct  CT-rich tract
                 ttttaagttt  TA-rich tract