1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...aagcttggttatttgactttcttgtgttgaatatttacatttcttgctttcctgttctgtagtgttttactgagtcatctttgatctattgattttctagTTGCTGGAAATGTTGATGAACAATATTGGAGAGCATATTCATGAGCAG
species | Glycine max |
transcript | GLYMA04G38320.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAAAGAGACTAGGAAGCAAACACCCCAATACTCAACTCTTTGCTGTCATG TTGCTGGAAATGTTGATGAACAATATTGGAGAGCATATTCATGAGCAGEST: gi|209717469|gb|BW653937.1|BW653937
genomic: AAAAGAGACTAGGAAGCAAACACCCCAATACTCAACTCTTTGCTGTCATGgtgagtataa ... gattttctagTTGCTGGAAATGTTGATGAACAATATTGGAGAGCATATTCATGAGCAG
EST: AAAAGAGACTAGGAAGCAAACACCCCAATACTCAACTCTTTGCTGTCATG TTGCTGGAAATGTTGATGAACAATATTGGAGAGCATATTCATG
genomic: AAAAGAGACTAGGAAGCAAACACCCCAATACTCAACTCTTTGCTGTCATGgtgagtataa ... gattttctagTTGCTGGAAATGTTGATGAACAATATTGGAGAGCATATTCATG
gctttcctgttctgtagtgttttactgagtcatctttgatctattgattttctagTTGCTGGAAATGTTGATGAACAATATTGGAGAGCATATTCATGAGCAG
tattgat putative branch site (score: 3)
ttttct CT-rich tract
tattgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagcttggttatttgactttcttgtgttgaatatttacatttcttgctttcctgttctgtagtgttttactgagtcatctttgatctattgattttctagTTGCTGGAAATGTTGATGAACAATATTGGAGAGCATATTCATGAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG