1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...aagcttggttatttgactttcttgtgttgaatatttacatttcttgctttcctgttctgtagtgttttactgagtcatctttgatctattgattttctagTTGCTGGAAATGTTGATGAACAATATTGGAGAGCATATTCATGAGCAGGTGATTGATACTGGAATTATTACTATTCTCGTAAAAATTGTGAAGAAAAAG
species | Glycine max |
transcript | GLYMA04G38320.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAAAGAGACTAGGAAGCAAACACCCCAATACTCAACTCTTTGCTGTCATG TTGCTGGAAATGTTGATGAACAATATTGGAGAGCATATTCATGEST: gi|208074890|gb|GD869605.1|GD869605
genomic: AAAAGAGACTAGGAAGCAAACACCCCAATACTCAACTCTTTGCTGTCATGgtgagtataa ... gattttctagTTGCTGGAAATGTTGATGAACAATATTGGAGAGCATATTCATG
EST: AAAAGAGACTAGGAAGCAAACACCCCAATACTCAACTCTTTGCTGTCATG TTGCTGGAAATGTTGATGAACAATATTGGAGAGCATATTCATGAGCAGGTGEST: gi|13252490|gb|BG363401.1|BG363401
genomic: AAAAGAGACTAGGAAGCAAACACCCCAATACTCAACTCTTTGCTGTCATGgtgagtataa ... gattttctagTTGCTGGAAATGTTGATGAACAATATTGGAGAGCATATTCATGAGCAGGTG
EST: AAAAGAGACTAGGAAGCAAACACCCCAATACTCAACTCTTTGCTGTCATG TTGCTGGAAATGTTGATGAACAATATTGGAGAGCATATTCATGAGCAG
genomic: AAAAGAGACTAGGAAGCAAACACCCCAATACTCAACTCTTTGCTGTCATGgtgagtataa ... gattttctagTTGCTGGAAATGTTGATGAACAATATTGGAGAGCATATTCATGAGCAG
gctttcctgttctgtagtgttttactgagtcatctttgatctattgattttctagTTGCTGGAAATGTTGATGAACAATATTGGAGAGCATATTCATGAGCAGGTGATTGATACTGGAATTATTACTATTCTCGTAAAAATTGTGAAGAAAAAG
tattgat putative branch site (score: 3)
ttttct CT-rich tract
tattgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagcttggttatttgactttcttgtgttgaatatttacatttcttgctttcctgttctgtagtgttttactgagtcatctttgatctattgattttctagTTGCTGGAAATGTTGATGAACAATATTGGAGAGCATATTCATGAGCAGGTGATTGATACTGGAATTATTACTATTCTCGTAAAAATTGTGAAGAAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - -tcttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tactgag