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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttgatcaagctccatgttattatagctgtgtgactgtgtctactattacatctacactttctaagaaggagctctatatacatattcattgtgtgcagCCATGAAGAGATCGATGTGAGTCATCCAGACTTTTTCAGTGTGGCAAAACTCAATGGTTATATTCCTCCAAATAAAGAG

Basic information

species Glycine max
transcript GLYMA04G36610.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G36610.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv17s0000g09970.t01 (Vitis vinifera), 3'ss of exon 4
-ttttgatcaagc-tccatgttattatagctgtgtgactgtgtctactatta-catctacactttctaagaaggagctctatatacatattcattgtgtgcagCCATGAAGAGATCGATGTGAGTCATCCAGACTTTTTCAGTGTGGCAAAACTCAATGGTTATATTCCTCCAAATAAAGAG
 |  | ||||  | || || || ||||   |       | | ||| ||   |  |  |    |   ||  ||| | || | |   ||| ||  || | || || || |||||||| |||||||| |||||||| || |||||||  ||||| | |||||| ||| |||||||||||||||||
atcctcatcatacatcaatcttcttatttataatctgttatatcttcttggagtaaatggcatgattatcaagaaactttct---catgtttgttatttgtagTCACGAAGAGATTGATGTGAGCCATCCAGAATTCTTCAGTGCAGCAAAGCACAATGGATATGTTCCTCCAAATAAAGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattacatctacactttctaagaaggagctctatatacatattcattgtgtgcagCCATGAAGAGATCGATGTGAGTCATCCAGACTTTTTCAGTGTGGCAAAACTCAATGGTTATATTCCTCCAAATAAAGAG
                               tatatacatattcatt  TA-rich tract