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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatgtctgctccttgtcttgttccttctagaggaagaggagaggtgacttggtgggatttggaaagagaagttttggtaatgtaaattgtaatgtgctttggtggaatggtgaacagGGCTGGATTTTGGAGTGCAATGGCATCCAATGTGACAAATCAATCTCGTAATGTTCTTAGCAAAAAGGCCATGGTTAATAAAGAG

Basic information

species Glycine max
transcript GLYMA04G35730.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G35730.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv17s0000g08560.t01 (Vitis vinifera), 3'ss of exon 4
------------------------------------------gtaagatgtctgctccttgtcttgttcc--ttctagaggaagaggagaggtgacttggtgggatttggaaagagaagttttggtaatgtaaattgtaatgtgctttggtggaatggtgaacagGGCTGGATTTTGGAGTGCAATGGCATCCAATGTGACAAATCAATCTCGTAATGTTCTTAGCAAAAAGGCCATGGTTAATAAAGAG
                                           ||  | |     | ||||| |||||    |||      |  |  |    |   |  |  | | ||| || |   |  || | |  ||  ||   |||| |  |    | |       | |||| | || |||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||| |||  |||| |||| ||||||
gtgagaaaataaatatgattatatgttatttattatccttttctataagggaatttacttgttttgtttgagttcagttacagaaaaattattagttcagaagtaattgaaatggttatcttagattctgacaaa-ataatctcatcattttgttcctaaatcagGTCCGGGTTTTGGAGTGCAATGGCATCAAATTTGACAAACCAATCTCGTAATGTTCTTAGCAAGAAGTTCATGATTAAGAAAGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31469095|gb|CD411123.1|CD411123
EST:     ATTGTTGGTGGAGTTGCACTGGCATCTGTTACAGAGGCCTCTTTCAATTG                         GGCTGGATTTTGGAGTGCAATGGCATCCAATGTGACAAATCAATCTCGTAA
genomic: ATTGTTGGTGGAGTTGCACTGGCATCTGTTACAGAGGCCTCTTTCAATTGgtaagatgtc ... tggtgaacagGGCTGGATTTTGGAGTGCAATGGCATCCAATGTGACAAATCAATCTCGTAA
EST: gi|10256147|gb|BE823913.1|BE823913
EST:     GTTGCACTGGCATCTGNNACAGAGNNNNCTTTCAATTG                         GGCTGGATTTTGGAGTGCAATGGCATCCAATGTGACAAATCAATCTCGTAA
genomic: GTTGCACTGGCATCTGTTACAGAGGCCTCTTTCAATTGgtaagatgtc ... tggtgaacagGGCTGGATTTTGGAGTGCAATGGCATCCAATGTGACAAATCAATCTCGTAA
EST: gi|7145742|gb|AW507664.1|AW507664
EST:     ATTGTTGGTGGAGTTGCACTGGCATCTGTTACAGAGGCCTCTTTCAATTG                         GGCTGGATTTTGGAGT
genomic: ATTGTTGGTGGAGTTGCACTGGCATCTGTTACAGAGGCCTCTTTCAATTGgtaagatgtc ... tggtgaacagGGCTGGATTTTGGAGT
EST: gi|207704437|gb|GD686652.1|GD686652
EST:     CACTGGCATCTGTTACAGAGGCCTCTTTCAATTG                         GGCTGGATTTTGGAGTGCAATGGCATCCAATGTGACAAATCAATCTCGTAA
genomic: CACTGGCATCTGTTACAGAGGCCTCTTTCAATTGgtaagatgtc ... tggtgaacagGGCTGGATTTTGGAGTGCAATGGCATCCAATGTGACAAATCAATCTCGTAA
EST: gi|192301535|gb|FG998443.1|FG998443
EST:     ATTGTTGGTGGAGTTGCACTGGCATCTGTTACAGAGGCCTCTTTCAATTG                         GGCTGGATTTTGGAGTGCAATGGCATCCAATGTGACAAATCAATCTCGTAA
genomic: ATTGTTGGTGGAGTTGCACTGGCATCTGTTACAGAGGCCTCTTTCAATTGgtaagatgtc ... tggtgaacagGGCTGGATTTTGGAGTGCAATGGCATCCAATGTGACAAATCAATCTCGTAA
EST: gi|58016526|gb|CX703268.1|CX703268
EST:     TTGTTGGTGGAG-TGCCACTGGCATCTGTTACAGAGGCCTCTTTCAATTG                         GGCTGGATTTTGGAGTGCAATGGCATCCAATGTGACAAATCAATCTCGTAA
genomic: TTGTTGGTGGAGTTG-CACTGGCATCTGTTACAGAGGCCTCTTTCAATTGgtaagatgtc ... tggtgaacagGGCTGGATTTTGGAGTGCAATGGCATCCAATGTGACAAATCAATCTCGTAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaagagaagttttggtaatgtaaattgtaatgtgctttggtggaatggtgaacagGGCTGGATTTTGGAGTGCAATGGCATCCAATGTGACAAATCAATCTCGTAATGTTCTTAGCAAAAAGGCCATGGTTAATAAAGAG
               taatgtaaattgtaat  TA-rich tract