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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtctcctaattccatatgtacaatttggttaccaaatatttattctatcttttgttttgtttttttatcaactatgctatttttgtatctcaccttttgtactaatggtgctcatcattctgcagGCTGGTAAATCTAGGAAAAGTGGCAGGCATGCAAATTGAAGCTATTGAATGCAATATATTAGCCTAGCTTGTGTCATGTTTGGGATAAAGGGGTGCATGT

Basic information

species Glycine max
transcript GLYMA04G33880.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15812537|gb|BI784812.1|BI784812
EST:     AGTACATTGAAGAGCATGGAACTGAAGCATTTGAGAATCTGCTTAGCAAG                         GCTGGTAAATCTAGGAAAAGTGGCAGGCATGCAAATTGAAGCTATTGAATG
genomic: AGTACATTGAAGAGCATGGAACTGAAGCATTTGAGAATCTGCTTAGCAAGgtgtctccta ... cattctgcagGCTGGTAAATCTAGGAAAAGTGGCAGGCATGCAAATTGAAGCTATTGAATG
EST: gi|208184539|gb|GD986611.1|GD986611
EST:     AGTACATTGAAGAGCATGGAACTGAAGCATTCGAGAATCTGCTTAGCAAG                         GCTGGTAAATCTAGGAAAAGTGGCAGGCATGCAAATTGACGCTATTGAATG
genomic: AGTACATTGAAGAGCATGGAACTGAAGCATTTGAGAATCTGCTTAGCAAGgtgtctccta ... cattctgcagGCTGGTAAATCTAGGAAAAGTGGCAGGCATGCAAATTGAAGCTATTGAATG
EST: gi|193549864|gb|FK507559.1|FK507559
EST:     AGTACATTGAAGAGCATGGAACTGAAGCATTTGAGAATCTGCTTAGCAAG                         GCTGGTAAATCTAGGAAAAGTGGCAGGCATGCAAATTGAAGCTATTGAATG
genomic: AGTACATTGAAGAGCATGGAACTGAAGCATTTGAGAATCTGCTTAGCAAGgtgtctccta ... cattctgcagGCTGGTAAATCTAGGAAAAGTGGCAGGCATGCAAATTGAAGCTATTGAATG
EST: gi|193533922|gb|FK492059.1|FK492059
EST:     AGTACATTGAAGAGCATGGAACTGAAGCATTTGAGAATCTGCTTAGCAAG                         GCTGGTAAATCTAGGAAAAGTGGCAGGCATGCAAATTGAAGCTATTGAATG
genomic: AGTACATTGAAGAGCATGGAACTGAAGCATTTGAGAATCTGCTTAGCAAGgtgtctccta ... cattctgcagGCTGGTAAATCTAGGAAAAGTGGCAGGCATGCAAATTGAAGCTATTGAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actatgctatttttgtatctcaccttttgtactaatggtgctcatcattctgcagGCTGGTAAATCTAGGAAAAGTGGCAGGCATGCAAATTGAAGCTATTGAATGCAATATATTAGCCTAGCTTGTGTCATGTTTGGGATAAAGGGGTGCATGT
                             tactaat  putative branch site (score: 1)
                                            tcattct  putative PPT
       tatttttgtat  TA-rich tract