1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgtaattttcatattatgattttcacctttgccttatacaacactgttagatttattcttaacgttgaattcagcaactgaaaggaatatcctgaaacagGTTGAAAAAGGGAAGCAAGATGATGCACTGTCAGATTTAAGTGATCTCTTGGGAGAACTGAAAGGCATGGCCATTGACATGGGATCTGAAATTGGGAG
species | Glycine max |
transcript | GLYMA04G32710.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGTCACGTACAACACTTTCTGAGCCATCAAATGTGCTTGAAAAAGTTGAG GTTGAAAAAGGGAAGCAAGATGATGCACTGTCAGATTTAAGTGATCTCTTGEST: gi|6726197|gb|AW310551.1|AW310551
genomic: AGTCACGTACAACACTTTCTGAGCCATCAAATGTGCTTGAAAAAGTTGAGgttagtattg ... cctgaaacagGTTGAAAAAGGGAAGCAAGATGATGCACTGTCAGATTTAAGTGATCTCTTG
EST: AGTCACGTACAACACTTTCTGAGCCATCAAATGTGCTTGAAAAAGTTGAG GTTGAAAAAGGGAAGCAAGATGATGCACTGTCAGATTTAAGTGATCTCTTGEST: gi|37997082|gb|CF808671.1|CF808671
genomic: AGTCACGTACAACACTTTCTGAGCCATCAAATGTGCTTGAAAAAGTTGAGgttagtattg ... cctgaaacagGTTGAAAAAGGGAAGCAAGATGATGCACTGTCAGATTTAAGTGATCTCTTG
EST: AGTCACGTACAACACTTTCTGAGCCATCAAATGTGCTTGAAAAAGTTGAG GTTGAAAAAGGGAAGCAAGATGATGCACTGTCAGATTTAAGTGATCTCTTGEST: gi|22926920|gb|BU544059.1|BU544059
genomic: AGTCACGTACAACACTTTCTGAGCCATCAAATGTGCTTGAAAAAGTTGAGgttagtattg ... cctgaaacagGTTGAAAAAGGGAAGCAAGATGATGCACTGTCAGATTTAAGTGATCTCTTG
EST: AGTCACGTACAACACTTTCTGAGCCATCAAATGTGCTTGAAAAAGTTGAG GTTGAAAAAGGGAAGCAAGATGATGCACTGTCAGATTTAAGTGATCTCTTGEST: gi|207770199|gb|GD740959.1|GD740959
genomic: AGTCACGTACAACACTTTCTGAGCCATCAAATGTGCTTGAAAAAGTTGAGgttagtattg ... cctgaaacagGTTGAAAAAGGGAAGCAAGATGATGCACTGTCAGATTTAAGTGATCTCTTG
EST: GAAAAAGTTGAG GTTGAAAAAGGGAAAGCAAGATGATGCACTGTCAGATTTAAGEST: gi|57575066|gb|CX548041.1|CX548041
genomic: GAAAAAGTTGAGgttagtattg ... cctgaaacagGTTGAAAAAGGG-AAGCAAGATGATGCACTGTCAGATTTAAG
EST: AGTCACGTACAACACTTTCTGAGCCATCAAATGTGCTTGAAAAAGTTGAG GTTGAAAAAGGGAAGCAAGATGATGCACTGTCAGATTTAAGTGATCTCTTG
genomic: AGTCACGTACAACACTTTCTGAGCCATCAAATGTGCTTGAAAAAGTTGAGgttagtattg ... cctgaaacagGTTGAAAAAGGGAAGCAAGATGATGCACTGTCAGATTTAAGTGATCTCTTG
gttagatttattcttaacgttgaattcagcaactgaaaggaatatcctgaaacagGTTGAAAAAGGGAAGCAAGATGATGCACTGTCAGATTTAAGTGATCTCTTGGGAGAACTGAAAGGCATGGCCATTGACATGGGATCTGAAATTGGGAG
tcttaac putative branch site (score: 2)
atttattcttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtaattttcatattatgattttcacctttgccttatacaacactgttagatttattcttaacgttgaattcagcaactgaaaggaatatcctgaaacagGTTGAAAAAGGGAAGCAAGATGATGCACTGTCAGATTTAAGTGATCTCTTGGGAGAACTGAAAGGCATGGCCATTGACATGGGATCTGAAATTGGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - ctttgcc
- - - - - - - - - - - - - - - - - - - - - -ctgttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaactg